RNA id: XM_022682749.1



Basic Information


Item Value
RNA id XM_022682749.1
length 1905
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC111195422
representative False

Chromosome Information


Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28194379 ~ 28213070 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


gagcgagaaagagagagagcgcgtctgtgcgtgtgtgtttgcatcGCTTCCTCCTCATTTGCATTCGTTTCTCAGCGTCTTTTTTCCGCGCTCGCGCTCCCTCTATCCAGACTTCGCATTTGGAAAAcctcctggaaaaaaaaacacaaaaaaacaaaggaggATCTGAATCTCTAATCTGGCGGAGAGGCTGAGGCTGCTGCTGCGTGTAGCTTGTACTGCTGTCGAATAGAAAAGGGgcattttttcccccattttcattttttacgcgttttctcttttttgttgcCCCCCCTCTCCAAGAGAACCAACCCTCCCTCCACTGACTGAGCACCCAGCACCAGTACCCAGCCCCGGCTCGCGGAGACACACGtgcgttttttttattatttcagggGAAGCTCCGTTCTCCGTTCGCGCTTCGCCAGCAGCCACAGGACTGTCTTTCTGTCGCCAgtttctacatttttatttatctgtgttATTTTTTCCCCTCGTTCGTCGCCGTTTCTCTCGGTGAGAGGGGGGGCTGAAGCGCTAGCCGCTCGGCGTTGTGTTTTTTAAGCCACAACTTCAGCATGTCGGAGGTGCTGCCGTACAACGAGGAGAAAATGAATCGTTATGGCGATGACGGAGACGAGGACCAGCACCTTTCCTTCACCTGCCGCCTCCAGGACACCAACAACTTCTTCAGCGGCAACCAGAACAAGCGACCGCCCAAGCTCGGCCAGATTGGGAGAAGCAAAAGAGTGGAGGAAGACAACGACGCAGAAGCGATGGAGAAGACCACAGACAAGTCCTCATCAGCGTGAGCGGACCCAAAGACACTTAACAACCACCTTTTGATGTGTGTACCCAaagacattgtaaaaaaaaaagaagcactctctctttttctcccatCTGGCGACAAAGCACTTCACACTTGCTCTCCAACCTCCCCATGTCCATTGAACAGGGATTGCTGATGGACGTTGTGGCGGGCGCCCGTGCTTGGGGGGGTATCTGGACGAATGGGCCCAGGGGTCGTGGAGGAATACTGTGTTTTCCAAACTTCACACGAGCTATGTGCAATGACAGAGGCCAGTCTCGTCAAACGAGGCTGGCCTCTCCTACCGGGATATGATGAAGCAATTAGAGAGACTGAGCCAATTATACCATTAACATCAAACCAGTGTCTTCCCCCAACTGCTGTGATTTGACGCACAGTTTGCTGTCGAGTTGCCGCTGATGATGTTAATGGTAAAATAGCAAAGTCGACGTCTCTTCCACAGTGAACCTCTAAAGAGATTCACTACGTATTTATTTAAAGGGGATAAAAGgctatttattaaaatctttggatacattttttgcagtgttggaGGTccgaataaatattttatagagAATGACAGGGGAAAAAACAAGTGATTTTTCCTTCcgatttatgttttttggatgtaGCTTGACTAAGGGATTACCATGGTCTACTCCCCTTTCCTTACTTCCTCCTTTATGgtaatttcatacaaacatgCATTTGATGTTTCTGAGCTGACAAAGGTTAGATCAGGTATGTCaagttaaaaagaaaacaaacataacaacaacaaaaagaatgGAAATAAGAAAACCTTACTGTTGCATTATTATTGTACTACATATTTATTGTAGGTGTGCCAAATAACCATGACAGAAATATGTATTTCTGTGCTCTCTTCACGTGCACAggtttattaatatttggtgtTCATGTTTACAGGGCTTTTTTCATACTAGTGATGTACTTTAGTCATGCATGACGAAACCTCGAGACCTCAAGAGAATCTTGATTATTATAATGGataatgttgtgtttatttCACAGAACATTTCTACAGGAATATCTGTAATATTAAAGATTTTGAGAAATGGAAACGAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU262468 lncRNA downstream 44051 28165841 ~ 28166081 (-) True G193411
TU262439 lncRNA downstream 142451 28067474 ~ 28067681 (-) True G193386
TU262418 lncRNA downstream 194520 28011063 ~ 28015612 (-) True tmem167b
TU262416 lncRNA downstream 194595 28010991 ~ 28015537 (-) False tmem167b
TU262484 lncRNA upstream 22427 28235165 ~ 28236469 (-) True G193424
TU262486 lncRNA upstream 31070 28243808 ~ 28244702 (-) True G193426
TU262496 lncRNA upstream 104606 28317344 ~ 28318704 (-) True G193435
TU262497 lncRNA upstream 104606 28317344 ~ 28317721 (-) False G193435
TU262559 lncRNA upstream 182959 28395697 ~ 28469608 (-) True G193477
XM_022682747.1 mRNA downstream 8910 28190720 ~ 28201222 (-) True LOC111195421
XM_022682745.1 mRNA downstream 47770 28065882 ~ 28162362 (-) False LOC103044609
XM_022682744.1 mRNA downstream 47770 28065882 ~ 28162362 (-) False LOC103044609
XM_022682746.1 mRNA downstream 47770 28068376 ~ 28162362 (-) True LOC103044609
XM_007247722.3 mRNA downstream 161437 28030686 ~ 28048695 (-) True LOC103026702
XM_007247721.3 mRNA upstream 4723 28217461 ~ 28224664 (-) True LOC103026411
XM_022682752.1 mRNA upstream 41046 28253784 ~ 28267940 (-) True LOC103044024
XM_007247720.3 mRNA upstream 57219 28269957 ~ 28294968 (-) False LOC103025279
XM_015605470.2 mRNA upstream 57219 28269957 ~ 28294968 (-) False LOC103025279
XM_022682753.1 mRNA upstream 57219 28269957 ~ 28294755 (-) False LOC103025279
TU262199 other downstream 733263 27425042 ~ 27476869 (-) False LOC103046149
TU262021 other downstream 1177043 27031663 ~ 27033089 (-) True G193097
TU261852 other downstream 2331479 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other downstream 2331479 25874910 ~ 25878653 (-) True LOC111195415
TU261664 other downstream 2992582 25211675 ~ 25217550 (-) True G192815
TU262651 other upstream 363369 28576107 ~ 28583747 (-) False LOC111195343
TU262654 other upstream 363369 28576107 ~ 28583747 (-) False LOC111195343
TU262661 other upstream 384817 28597555 ~ 28598638 (-) True G193541
TU262902 other upstream 1953023 30165761 ~ 30180126 (-) True G193737
TU263040 other upstream 2597056 30809794 ~ 30830946 (-) True spcs1

Expression Profile


XM_022682749.1 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 75.
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XM_022682749.1 Expression in each Bioproject

Bar chart with 7 bars.
XM_022682749.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.