RNA id: TU262484


Basic Information

Item Value
RNA id TU262484
length 1305
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G193424
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28235165 ~ 28236469 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttaaaaatactgtaccAGACACTTGGTATTGCAGTATATTCATTTACGTCCATATTGCATGGTGGAATAACATTCTGTCAACTTTCGAAGGTCTTCAGTTTGAACACAGGCCAAGATAAACAGCAGATTTGAGACAAAACTGATCGTTTGCCCCTGACGTAAACCGGACCACCTGCCAGACCATTAAGTTGTTTTGTTTCCTGTTCTAGTCTGGTTCATTTCATTATAGGCAAACCCAACCACTGCTACACAACGTGGCTACTTTGGAATAGCAAGACCCTCATAATGCACTACACCAGTGGTCTTCCACTCAAACTGTGGTACATGTGCCACTGGTGGTACATAAAGCATCCCAAGGCGGGTACATCATATGAACAAAAAGATTTGTTGtttgtgttcagtgtttaatcTGTTACACTCTGTATATAATCCCACACTGCAGTTCTTTACTTTTACAACTACAGTACTATAACTGACAAAAGTTTTATAGGCCCTACAATAGAGCCTGAGGAACTCCTCAATTCCCAATAGTTTCTGCATTAGGATTAATAGCAGAATATTTAACCTAGGGTTTAAGAGGATACCATGCAGACACTGTAGTTTACTAAAGAGCCTCATCCTCCAGTTATTTCCCTCGTAACTAATACGTTTTATGATGTTTGATCATGGCTAAGTGGATACGTGGGTTTGGTAATCCCTATACTACATAGCCTCTGATTTCTAGGTTAAAATTAAGGTGTAAAATGCAAAGCCATGTATCCGATGGTGGTGTTTTTTggcaaaaaatgtattaaattaaatcaaaacgGTATATTGCTGCTGTCTTGCCAAAACATTGTATTTCCAAAATGGCAGCATGACAGGAGAAGAACTGgccaatgtaaaatattttatttggatccATTCAATATGATACAATTAAAGTCTATACAATGTATAGAACAAGTGCcagatttaactttaaaaaccagcaaaaatggaaatacaagGTTATTGTGGGacagaaaaaataagtattcatcttatctttatttatttttgtttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262468 lncRNA downstream 69084 28165841 ~ 28166081 (-) True G193411
TU262439 lncRNA downstream 167484 28067474 ~ 28067681 (-) True G193386
TU262418 lncRNA downstream 219553 28011063 ~ 28015612 (-) True tmem167b
TU262416 lncRNA downstream 219628 28010991 ~ 28015537 (-) False tmem167b
TU262415 lncRNA downstream 219628 28011063 ~ 28015537 (-) False tmem167b
TU262486 lncRNA upstream 7339 28243808 ~ 28244702 (-) True G193426
TU262496 lncRNA upstream 80875 28317344 ~ 28318704 (-) True G193435
TU262497 lncRNA upstream 80875 28317344 ~ 28317721 (-) False G193435
TU262559 lncRNA upstream 159228 28395697 ~ 28469608 (-) True G193477
TU262660 lncRNA upstream 359182 28595651 ~ 28596007 (-) True G193540
XM_007247721.3 mRNA downstream 10501 28217461 ~ 28224664 (-) True LOC103026411
XM_022682749.1 mRNA downstream 22427 28210132 ~ 28212738 (-) False LOC111195422
XM_022682747.1 mRNA downstream 33943 28190720 ~ 28201222 (-) True LOC111195421
XM_022682745.1 mRNA downstream 72803 28065882 ~ 28162362 (-) False LOC103044609
XM_022682744.1 mRNA downstream 72803 28065882 ~ 28162362 (-) False LOC103044609
XM_022682752.1 mRNA upstream 17315 28253784 ~ 28267940 (-) True LOC103044024
XM_007247720.3 mRNA upstream 33488 28269957 ~ 28294968 (-) False LOC103025279
XM_015605470.2 mRNA upstream 33488 28269957 ~ 28294968 (-) False LOC103025279
XM_022682753.1 mRNA upstream 33488 28269957 ~ 28294755 (-) False LOC103025279
XM_022682754.1 mRNA upstream 33488 28269957 ~ 28291499 (-) True LOC103025279
TU262455 other downstream 22095 28210191 ~ 28213070 (-) True LOC111195422
TU262456 other downstream 22447 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other downstream 22447 28210024 ~ 28212718 (-) False LOC111195422
TU262199 other downstream 758296 27425042 ~ 27476869 (-) False LOC103046149
TU262021 other downstream 1202076 27031663 ~ 27033089 (-) True G193097
TU262651 other upstream 339638 28576107 ~ 28583747 (-) False LOC111195343
TU262654 other upstream 339638 28576107 ~ 28583747 (-) False LOC111195343
TU262661 other upstream 361086 28597555 ~ 28598638 (-) True G193541
TU262902 other upstream 1929292 30165761 ~ 30180126 (-) True G193737
TU263040 other upstream 2573325 30809794 ~ 30830946 (-) True spcs1

Expression Profile