RNA id: TU262660



Basic Information


Item Value
RNA id TU262660
length 357
lncRNA type inter_gene
GC content 0.65
exon number 1
gene id G193540
representative True

Chromosome Information


Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28595651 ~ 28596007 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ACCTATGGTGGTAATGACGGTGAGGGAGAAATAGAAGGAGCCGGGGAAGCTCCACTGCCGCCCGGCTCGGTGAGGGCTGGACCGGAGCAGCACGCGCTCCAGCGCGCGGTAATCCTCCTCCGTAAATCCGTACTTCTGCCTCATCTCAGCGCATCTCCGCTCCACCCTGCGCCCCCCCGTAGCGCTCGCTCTCCGCCTCGAGCGCCTCGAACACGGCGGCTCCCGCCAGCAGGTAGGCGAGCACGCAGAGCACGAGCACGAGCGCGCGGACACTCGGCGCCTTCATCCGAGGAGTGAACACCTGAAGTTCCTGAAGTTCCAGCGAACTGAACCGCAGCGCTGCCTGAGAGATCTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU262559 lncRNA downstream 126043 28395697 ~ 28469608 (-) True G193477
TU262496 lncRNA downstream 276947 28317344 ~ 28318704 (-) True G193435
TU262497 lncRNA downstream 277930 28317344 ~ 28317721 (-) False G193435
TU262486 lncRNA downstream 350949 28243808 ~ 28244702 (-) True G193426
TU262484 lncRNA downstream 359182 28235165 ~ 28236469 (-) True G193424
TU262689 lncRNA upstream 279910 28875917 ~ 28930921 (-) True G193568
TU262778 lncRNA upstream 579907 29175914 ~ 29176124 (-) True G193637
TU262779 lncRNA upstream 580448 29176455 ~ 29176865 (-) True G193638
XR_002651643.1 lncRNA upstream 631697 29227704 ~ 29232967 (-) True LOC111195426
TU262783 lncRNA upstream 667967 29263974 ~ 29266389 (-) True G193642
XM_022682150.1 mRNA downstream 9429 28582978 ~ 28586222 (-) True LOC111195343
XM_022682766.1 mRNA downstream 24709 28546579 ~ 28570942 (-) False LOC103046446
XM_022682765.1 mRNA downstream 24709 28546579 ~ 28570942 (-) False LOC103046446
XM_022682764.1 mRNA downstream 24710 28546579 ~ 28570941 (-) True LOC103046446
XM_022682761.1 mRNA downstream 88095 28459080 ~ 28507556 (-) True LOC103043100
XM_022682767.1 mRNA upstream 555714 29151721 ~ 29173495 (-) True LOC103042433
XM_022682771.1 mRNA upstream 581339 29177346 ~ 29219008 (-) False LOC103040895
XM_022682769.1 mRNA upstream 581339 29177346 ~ 29212246 (-) False LOC103040895
XM_022682770.1 mRNA upstream 581339 29177346 ~ 29212233 (-) True LOC103040895
XM_022682773.1 mRNA upstream 637505 29233512 ~ 29254829 (-) False LOC103042113
TU262651 other downstream 11904 28576107 ~ 28583747 (-) False LOC111195343
TU262654 other downstream 11904 28576107 ~ 28583747 (-) False LOC111195343
TU262455 other downstream 382581 28210191 ~ 28213070 (-) True LOC111195422
TU262456 other downstream 382933 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other downstream 382933 28210024 ~ 28212718 (-) False LOC111195422
TU262661 other upstream 1548 28597555 ~ 28598638 (-) True G193541
TU262902 other upstream 1569754 30165761 ~ 30180126 (-) True G193737
TU263040 other upstream 2213787 30809794 ~ 30830946 (-) True spcs1
TU263041 other upstream 2213787 30809794 ~ 30830946 (-) False spcs1
TU263184 other upstream 2574332 31170339 ~ 31172469 (-) False LOC103037496

Expression Profile