RNA id: XM_007228731.2


Basic Information

Item Value
RNA id XM_007228731.2
length 579
RNA type mRNA
GC content 0.43
exon number 4
gene id spcs1
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 30809794 ~ 30830957 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGGGTCCTTCCGAAATCTACGTGCACCTTTTTGAAACAGGAAATCACACATTCATATTAACTGCAGataagtttatgtttaaatCGGATTAATTCGGATATTTCAGCATGCTGTCTATGTTCAAATCGATTCCGACGCATATGGATTACAAAGGACAGAAACTTGCAGAGCAGATTTTCCAGGGCATCATCCTCGTCTCTGCGgtCATTGGATTCATTTATGGTCTTATAATTGAGCAGTTTGGATGGACTGTTTATATAATGTTAGCTGGATTCACTGTCTCTTGTTTGCTCACACTGCCTCCATGGCCCATGTACAGACAGAACCCCCTCACCTGGCAGCCTGCTTTACCCGAGGCCCCCGTAGAGAGCCGTGAAAAGCCTCAGGAGAatttaaagaagaagaaacacaAGTAGAACACCATCTGCTTATCACCTGAACCCCTCTGCCTATGGCCCCACCCGCCCCATGTTTCACAGACATTGTGGACTTGCCAAAATTGGATAAAACTGTACGGATTGCTCTCGTTTCATGTTAAATTACAAATCTGTTTAATAAAGAAGATTCATCATTCTTA

Function

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0005787 signal peptidase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263014 lncRNA downstream 99870 30724432 ~ 30728862 (-) True G193818
TU262947 lncRNA downstream 227834 30537778 ~ 30600898 (-) True G193770
TU262949 lncRNA downstream 285115 30537778 ~ 30543617 (-) False G193770
TU262940 lncRNA downstream 323695 30436885 ~ 30505037 (-) True G193764
TU262901 lncRNA downstream 619754 30156138 ~ 30208978 (-) True G193736
TU263053 lncRNA upstream 13098 30844055 ~ 30845956 (-) True G193846
TU263075 lncRNA upstream 62670 30893627 ~ 30911740 (-) True G193866
TU263102 lncRNA upstream 137362 30968319 ~ 30983362 (-) True G193886
TU263105 lncRNA upstream 180330 31011287 ~ 31011543 (-) True G193889
TU263107 lncRNA upstream 187790 31018747 ~ 31019226 (-) True G193891
XM_022682781.1 mRNA downstream 26224 30729235 ~ 30802508 (-) True LOC103040946
XM_022682154.1 mRNA downstream 108487 30718976 ~ 30720245 (-) True LOC103043315
XM_022682776.1 mRNA downstream 1069107 29302534 ~ 29759625 (-) True ptprg
XM_007256856.3 mRNA downstream 1537129 29280150 ~ 29291603 (-) True cse1l
XM_022682774.1 mRNA downstream 1550168 29269921 ~ 29278564 (-) False LOC103040276
XM_022682784.1 mRNA upstream 16340 30847297 ~ 30856549 (-) True gnl3
XM_007228721.3 mRNA upstream 339341 31170298 ~ 31194049 (-) True LOC103037496
XM_007228720.2 mRNA upstream 339341 31170298 ~ 31172480 (-) False LOC103037496
XM_022682787.1 mRNA upstream 364865 31195822 ~ 31230829 (-) False sfmbt1
XM_022682786.1 mRNA upstream 364865 31195822 ~ 31230827 (-) True sfmbt1
TU262902 other downstream 648606 30165761 ~ 30180126 (-) True G193737
TU262661 other downstream 2230094 28597555 ~ 28598638 (-) True G193541
TU262651 other downstream 2244985 28576107 ~ 28583747 (-) False LOC111195343
TU262654 other downstream 2244985 28576107 ~ 28583747 (-) False LOC111195343
TU262455 other downstream 2615662 28210191 ~ 28213070 (-) True LOC111195422
TU263184 other upstream 339382 31170339 ~ 31172469 (-) False LOC103037496
trnae-cuc_20 other upstream 343850 31174807 ~ 31174878 (-) True trnae-cuc_20

Expression Profile