RNA id: XM_007228720.2



Basic Information


Item Value
RNA id XM_007228720.2
length 680
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC103037496
representative False

Chromosome Information


Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31170298 ~ 31194049 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GGAGATATAGGCCCCAAGAGAGGAGGATATCAGTCAGGGTTAAATACCGTATATAAAGGGCAGGACAGACAGAGCAGAGACAGAAGAGAGTGGACAGCAGCTTCTGGTTTGGACTACAAGGACACTCAACATGTCTCAGCCAGGAGAggtgaagaaaaagaagaggccTCCAGTGAAGGAGGAGGACCTGAAAGCAGCCCGCAGTAAGCTGGGCCTAAAGGGAGAAGTGAAGAGTAAAACGTATGAGGTCATGGTGGAGTGTGAGCGTATGGGTAAAGTGGCTCCATCCGTATTCAGTGGTGTTCGTTCAGGAGGAGAGACAGCACTGGACAAACCCAAACCTGCAGCAGGAAGTGTGTTTGGCAAGTGAGGACATCAGAAAAGCATcagaaagaagataaagaacACAAAGTTTGGATGAATGACCCTTCTGGAAAGTTACAATGGTCtgagggataattatcttaaaaagtgatttgaattatttttttatatacatttgtgCCCATCTGTACAATGACTGAACACTTTAGCAACACTGATATAATTTGATTGATGTTGATTTTATATTCTATGTGGTCATattcatacttttttaaatacatatgtaTTTGTCTGGTCCTTTGAGCCAATTTCTAGTCTTATGTTTTAtacaataaagtaataaaattgtCATATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU263189 lncRNA downstream 1415 31137974 ~ 31168883 (-) True G193959
TU263197 lncRNA downstream 19056 31148645 ~ 31151242 (-) True G193962
TU263196 lncRNA downstream 19402 31148645 ~ 31150896 (-) False G193962
TU263193 lncRNA downstream 24361 31144331 ~ 31145937 (-) True G193961
TU263107 lncRNA downstream 151072 31018747 ~ 31019226 (-) True G193891
TU263200 lncRNA upstream 21684 31194164 ~ 31194838 (-) True G193964
TU263212 lncRNA upstream 129000 31301480 ~ 31304310 (-) True G193968
TU263223 lncRNA upstream 239439 31411919 ~ 31414467 (-) True G193978
TU263226 lncRNA upstream 245269 31417749 ~ 31418526 (-) True G193980
TU263301 lncRNA upstream 278337 31450817 ~ 31529927 (-) False cadps
XM_022682784.1 mRNA downstream 313749 30847297 ~ 30856549 (-) True gnl3
XM_007228731.2 mRNA downstream 339341 30828732 ~ 30830957 (-) False spcs1
XM_022682781.1 mRNA downstream 367790 30729235 ~ 30802508 (-) True LOC103040946
XM_022682154.1 mRNA downstream 450053 30718976 ~ 30720245 (-) True LOC103043315
XM_022682776.1 mRNA downstream 1410673 29302534 ~ 29759625 (-) True ptprg
XM_022682787.1 mRNA upstream 23342 31195822 ~ 31230829 (-) False sfmbt1
XM_022682786.1 mRNA upstream 23342 31195822 ~ 31230827 (-) True sfmbt1
XM_022682788.1 mRNA upstream 65991 31238471 ~ 31287104 (-) True LOC103036366
XM_022682789.1 mRNA upstream 66348 31238828 ~ 31287104 (-) False LOC103036366
XM_022682790.1 mRNA upstream 66348 31238828 ~ 31287104 (-) False LOC103036366
TU263040 other downstream 339352 30809794 ~ 30830946 (-) True spcs1
TU263041 other downstream 339352 30809794 ~ 30830946 (-) False spcs1
TU262902 other downstream 990172 30165761 ~ 30180126 (-) True G193737
TU262661 other downstream 2571660 28597555 ~ 28598638 (-) True G193541
TU262654 other downstream 2586551 28576107 ~ 28583747 (-) False LOC111195343
trnae-cuc_20 other upstream 2327 31174807 ~ 31174878 (-) True trnae-cuc_20

Expression Profile