RNA id: XM_022682797.1


Basic Information

Item Value
RNA id XM_022682797.1
length 4334
RNA type mRNA
GC content 0.53
exon number 28
gene id cadps
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31450803 ~ 31654210 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCACCACGAACAGCGCCCAGCGCTTCAGCTCTGGAAGTAACAAAGCGCAGCGGGCGGCGCAGCGGCGGCGAGGACGCGATGGATGGCGAGGAGCTTCTGACAGCAGCTTTACTGCTTTAACCACACCTCAACCCTCCACACCAGAGATCTATCGCTCTATCGCGACGAATGGAGCGTTAAAAACGCGGCGAACAACAAATCTGGGGACTTAAACTGGAGTTTCTCCAGACCTTCTACTCCAAACCAGACTCGCCCAACCTTCATCCTCTTTTTTCTTGCACAAGTGCCACTTTGGAGGGGTTGTTTTTGGTCGTGTGGACTAAAGTAAACTAAAGACAAagctttttctgttttctgttgtcaTTTTTGGTGGGTTGGAGCATTGTGGTGGTCTACACTTTCCTCACTTCTCATCAGGtgggtttggttttggtttattttgtttgtttgatttttttcgTAGTAGGACTAGTAGGCACCATCGCCTTTCTTTCCTTGGGTTCTTTTTccggttttctttctttccaaagCAAAAAAGCTCCCAAAACTCAATAACTCAAAGAAAATGTTGGACCCTTCGTCCAgcgaggaggaggatgaggtgGTGGAGGAAGAGCGTAAAGTGACCCAAGCTCCCAAGACTGGAGCCCCCAGAGTCTCTCCAAATAGGACCGGCGAGAGCCCTGGAGGTCTACAGCCGGCCAGGACCAACAATGCCCGGCCGACCAGCCCAGGGCCGTCGGCGGCTCTGGAGAAGGAGAAGGATGATCTGGAGAAGatgcagagagaggaagaagaacGAAAGAAGCGTCTGCAGCTCTACGTCTTCGTAATGCGCTGCATTGCCTACCCGTTCAACGCCAAGCAGCCGACGGACATGGCAAGGCGACAGCAGAAGATCAGTAAGATGCATCTACAGACCGTGAAGGATCGCTTTCAGGCCTTTCTGAATGGAGAGACACAGATTGTGGCAGACGAGGCGTTCATCAACGCTGTGCAAAGCTACTATGAGGTGTTCCTGAAGAGCGACCGGGTGTCTCGCATGGTCCTGAGTGGTGGATTCTCAGCGAACGACTCGCGGGATGTTTTTAAGAAGCACATTGAGAAGCGAGTGAGAAGCCTGCCTGAGATCGACGGCCTCAGCAAGGAGACGGTGCTCAGCTCCTGGATGGCCAAGTTTGACACCATCTATCGGGGCGAGGAGGACCCGAGGAAGCACCAGCAGCGGATGACGGCCAGTGCCGCCTCCGAGCTCATCCTCAGCAAGGACCAGCTTTATGAAATGTTCCAGCAGATTCTTGGCATAAAGAAGTTTGAACATCAGCTGCTCTACAACGCCTGCCAGTTGGACAACCCAGACGAACAGGCTGCTCAGATCAGACGAGAACTAGACGGACGCCTCCAGATGGCCGATCAGATTGCTAAAGCCGGTAAATTCCCAAAGTTTGTGTCGAAGGATATGGAGGCCATGTACATCGAGGAGCTGAAGTCCTCGGTGAATCTGCTCATGGCCAACCTGGAGAGCATGCCGGTGTCTAAAGGAGGCgagtttaaactgcagaaactGAAGAGAGGGCACAACACCTCCATCATCGACATGGGCCAGGAGGACGAGAACCAGCTCTCCAAGTCTGACGTggtcctctccttcactctagAGGTTGTGATCATGGAGGTGCAGGGTCTGAAGTCACTGGCACCCAACCGCATCGTCTACTGCACCATGGAGGTGGAGGGAGGCCAGAAACTACAAACAGACCAGGCAGAGGCTTCCAAACCAACtTGGGGAACGCAAGGAGACTTCACCACCACACACCCGCTTCCTGCTGTGAAGGTGAAGCTTTTCACAGAGAGCACCGGAGTGCTGGCACTGGAAGATAAAGAGCTGGGACggGTTGTGTTGCATCCAACTCCCAACAGCCCCAAACAGTCTGAGATTCACAAGATGACCGTGTCTAAGGGCTGCCCTGACAATGACCTGAGGATTAAATTAGCCGTTCGCATGGACAAACCTCAGAATATGAAACACTGTGGATACCTTTGGACCATTGGGAAAAATGTGTGGAAGAGGTGGAAGAAGAGATTCTTTGTCTTGGTGCAGGTGAGCCAGTACACCTTTGCCATGTGCAGCTACAGAGAAAAGAAGGCGGAGCCTGTGGAGCTGCTCCAATTGGACGGATACACTGTGGATTACACAGACCCTCAGCCAGGTTTGGATGGCGGGAGGACGTTCTTTAATGCAGTAAAGGAGGGAGACACTGTGATCTTTGCCAGCGATGATGAGCAGGACCGGATCCTGTGGGTTCAGGCCATGTACAGGGCCACGGGTCAGTCCCACAAACCGGTCCCCCCAACCCAGGTGCAGAAACTCAACTCTAAAGGAGGAACAGCCCCACAGCTGGATGCTCCAATCTCACAGTTCTCTGGACTGAGGGACGCAGACCGAGCGCAGAAACACGGGATGGACGAGTTCATCTCAGCGAACCCCTGCAACTTCCACCACTCCTCTCTCTTCGAGATGGTGCAGCGCCTCACACTGGACCACAGACTGAATGACTCCTACTCCTGTCTGGGTTGGTTTAGTCCAGGTCAGGTGTTTGTACTGGACGAGTACTGCGCCAGAAATGGCGTGCGGGGCTGCCACAGACACCTGTGCTACCTGAGCGACCTGCTGGAGAGAGCTGAGAACGGCGCCATGATCGACCCCACGCTGCTCCACTACAGCTTTGCCTTCTGCGCTTCACATGTACACGGCAACAGGCCCGATGGAATTGGCACTGTCACAGTGGAGGAGCGTGAACGCTTCGAGGAGATTAAAGAAAGACTGCGAGTGCTGCTGGAGAACCAGATCACACATTTCAgGTACTGTTTTCCGTTTGGACGGCCAGAAGGAGCTCTCAAGGCCACTCTTTCACTGCTGGAGAGGgtTCTCATGAAGGACATTGTAACACCAGTCCCGCAGGAAGAGGTGAAGGCTGTGATCCGAAAGTGTCTGGAGCAGGCGGCTTTGGTCAACTACCAGCGGCTCTCTGAGTACGCAAAAGTggaagAGAATGTAGGCCGGTTAGTTACGCCTGCCAAAAAACTGGAAGACACACTTCGCCTGGCTGAACTGGTCATCGAGGTGCTACAGCAGAACGAGGAGCATCATGCAGAGGCATTCGCGTGGTGGTCTGATCTGATGGTGGAACACGCCGAGACGTTCCTGTCCCTTTACGCTGTGGATATGGATGCAGCGCTGGAAGTCCAGCCACCAGACAGCTGGGACAGTTTTCCACTCTTTCAACTGCTCAACGACTATCTGCGCCTTGACTACAACCTGTGTAATGGGAAGTTCCACAAGCACCTGCAAGACCTCTATGCCCCCCTGGTGGTGAGATATGTGGATCTAATGGAGTCTTCCATTGCCCAGTCAATCCACCGGGGCTTTGAGCGCGAGTCCTGGGAGCCAGTAAACAATGGTTCAGGAACGTCAGAGGATCTGTTCTGGAAGCTGGATGCTCTGCAGACGTTTATCAAAGACCTGCACTGGCCAGAGGAGGAGTTTGGCAAACATCTGGAGACCAGGCTTAAACTGATGTCCAGTGACATGATCGAGTCCTGTGTGAAAAgAACCAGGATAGCATTTGAAGTGAAGCTGCAGAAGAGCAGTCGGACCACAGACTTCCGTGTTCCCCAGTCCATATGTACCATGTTCAACGTCATGGTGGACGCCAGGGCCCAGTCCGCCAAGCTGTGCACCATGGAGCTCGGCCAGGAGcGCCAGTACCACTCTCAAATCGACGATCTTATTGAGGAGACGGTGAAGGAAATGATTACCTTACTGGTGGCAAAGTTTGTGGTGATTCTGGAGAGCGTCCTGGCCAAGCTCTCTCGCTACGATGAGGGCACCCTTTTCTCATCCTTCTTATCGTTTACAGTCAAAGCTGCCTCAAAATATGTGGATGTTCCTAAACCTGGCATGGATGTAGCTGATGCCTACGTGACGTTCGTTCGCCACTCTCAGGATGTCTTGCGGGACAAGGTCAATGAGGAGATGTACATAGAAAGATTATTTGATCAATGGTATACTAGCACCATGAACCTGTTGGGGACTTGGCTAACAGATCGGATGGACCTGCAGCTTCACCTCTACCAGCTGAAAATCCTCATCCGAGTCGTAAAGAAAAAGTATCGTGATTTCCGGCTGCAAGGCGTCCTGGACTCGACTCTGAACAGCAAGATGTACGAAACGGTAAAGAACAGGCTGATGCTTGAGGAGGCTACAGCGTCAGTGCGAGATGGAGGGATGCTGGGGATCTCGATGAAGGACAGCGACGAGGAAGACGATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263226 lncRNA downstream 33367 31417749 ~ 31418526 (-) True G193980
TU263223 lncRNA downstream 37426 31411919 ~ 31414467 (-) True G193978
TU263212 lncRNA downstream 147583 31301480 ~ 31304310 (-) True G193968
TU263200 lncRNA downstream 257055 31194164 ~ 31194838 (-) True G193964
TU263197 lncRNA downstream 300651 31148645 ~ 31151242 (-) True G193962
TU263328 lncRNA upstream 42062 31696272 ~ 31697770 (-) True G194055
TU263316 lncRNA upstream 44630 31698840 ~ 31702252 (-) True G194046
XR_002651582.1 lncRNA upstream 240292 31894502 ~ 31899990 (-) True LOC111195341
TU263404 lncRNA upstream 243381 31897591 ~ 31898384 (-) False LOC111195341
TU263390 lncRNA upstream 247598 31901808 ~ 31902072 (-) True G194105
XM_022682793.1 mRNA downstream 16406 31430891 ~ 31435487 (-) True fezf2
XM_022682792.1 mRNA downstream 81347 31305567 ~ 31370546 (-) False LOC103035852
XM_007228716.3 mRNA downstream 81347 31305567 ~ 31370546 (-) False LOC103035852
XM_007228715.3 mRNA downstream 81347 31305567 ~ 31370546 (-) True LOC103035852
XM_022682790.1 mRNA downstream 164789 31238828 ~ 31287104 (-) False LOC103036366
XM_015602562.2 mRNA upstream 85661 31739871 ~ 31747170 (-) True LOC107197084
XM_007228710.3 mRNA upstream 124147 31778357 ~ 31785020 (-) True thoc7
XM_022682807.1 mRNA upstream 186898 31841108 ~ 31844991 (-) True psmd6
XM_022682808.1 mRNA upstream 250025 31904235 ~ 31907805 (-) True LOC111195428
XM_007256437.3 mRNA upstream 275516 31929726 ~ 32080712 (-) False prickle2
trnae-cuc_20 other downstream 277015 31174807 ~ 31174878 (-) True trnae-cuc_20
TU263184 other downstream 279424 31170339 ~ 31172469 (-) False LOC103037496
TU263040 other downstream 620947 30809794 ~ 30830946 (-) True spcs1
TU263041 other downstream 620947 30809794 ~ 30830946 (-) False spcs1
TU262902 other downstream 1271767 30165761 ~ 30180126 (-) True G193737

Expression Profile