RNA id: TU263567


Basic Information

Item Value
RNA id TU263567
length 1324
lncRNA type intronic
GC content 0.39
exon number 2
gene id G194234
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 32330326 ~ 32334659 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTGTCCAAGTGTAAACCTGGACATACGGGCACCTGCGTAATTCACGTCATTAAGTCCTTGAATAGCAGTGTCCAACGAGTGGTAGTGGGATTTGTGCTCTTTCTCCAGCAGAGTCTGAAAGAACGTTGAATTAATGCCTTTGCGCAAGAAAAAAAGATCCAAGGCCGTCCGCACAGGTCTCAAAAGCTTCCTGAATTTGCATTGTCAAGGCAGTAATTGGAAAGGTTTCAGGGCCGTCACAGGCTGACCTGTGTGGATTATTAATTTGATGAATTGAAAAACCTGTTATCAGTTGTTTTTAGGCTGTAAATAGCACAGGAATTGCAGTCCTGGAATTCAGCGATTGGCGAGGTCACCACTTTCCTCATATTATTAAACCTTTCACTTAGTAATTGTTGAAGGAAAATTCCTGTCAGATGAGTATGCGTCAAGCCTGTGTCCTTTGTGCTGTAGCGTAGAATTCTTAGATGTTTCTGTAAAGCAAGCAGATTTGCACACTAAAGACTTGAGACTAGAAACACATCACTTGACTCTGACTTGAACCCTAAATACTTGAATCAGATTTGCACCCTAAAGACTTAAGACATTACTCTTACCTGCATCCTAAACATGACTCGGACACAAGTCGTAAAGATATGAGACTACAGACTCAAGAGTTGACTCTGACTTGCTCTCTAAATACTTGACTGGGATTTTCACTTAaggacttgagacttgactctgACTTGCACCCTCAACCTTCGACTTGTATTTTCCCCCTAAAGACTTATGACTTTACGTGAGACTTGAATCTGAGTTGTAgtcaagtcaagtagttttattgtcagtactgcatatgtacaggacatacagagaattgaaattacattactctcATTCCtaattttacagcaggtacagataatagatataataaaagaaagaatgggagacactatgggtacaatacagcagggacacaatagacatacatgagacaaaaacaaggtgcagtattGGTGGGGgcgaaatagatatataaatataagtaaaaagaaatagatTTATAATccaaaagagtgggagacactatacgTACCAgacaacaagacacaaaaaaCATAAGTGAGAcgaaagacaatagtgcaatattgatggtgattgagatgggaggacagtataaatagaacccgtataacagtagtgcaaatatggtataaagcttaaggctggtaaagtgaatgagtgcgtaaagtacttaaaagttcacagtttttgggGAATGAAAGTGCGTactgacagtgcaagtatagcagtagtgcaggtattgtgTGTGTACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263433 lncRNA downstream 246696 32081508 ~ 32083630 (-) True G194142
TU263444 lncRNA downstream 248955 32081015 ~ 32081371 (-) True G194153
TU263390 lncRNA downstream 428254 31901808 ~ 31902072 (-) True G194105
XR_002651582.1 lncRNA downstream 430336 31894502 ~ 31899990 (-) True LOC111195341
TU263404 lncRNA downstream 431942 31897591 ~ 31898384 (-) False LOC111195341
TU263578 lncRNA upstream 147272 32481931 ~ 32482201 (-) True G194244
XM_022682812.1 mRNA downstream 133565 32099466 ~ 32196761 (-) True adamts9
XM_007256437.3 mRNA downstream 249614 31929726 ~ 32080712 (-) False prickle2
XM_022682810.1 mRNA downstream 294952 31929726 ~ 32035374 (-) False prickle2
XM_022682811.1 mRNA downstream 313717 31929726 ~ 32016609 (-) False prickle2
XM_007256438.3 mRNA downstream 360388 31929726 ~ 31969938 (-) True prickle2
trnae-cuc_20 other downstream 1155448 31174807 ~ 31174878 (-) True trnae-cuc_20
TU263184 other downstream 1157857 31170339 ~ 31172469 (-) False LOC103037496
TU263040 other downstream 1499380 30809794 ~ 30830946 (-) True spcs1
TU263041 other downstream 1499380 30809794 ~ 30830946 (-) False spcs1
TU262902 other downstream 2150200 30165761 ~ 30180126 (-) True G193737

Expression Profile