RNA id: XM_007229621.3


Basic Information

Item Value
RNA id XM_007229621.3
length 1564
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC103027392
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12994479 ~ 12998610 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGAGCGCGCGGGAGGGGGAGCGCGAGCGGGCCGTGCGCAAACCGCGTGTGGCGCAGCGCGGAGAGGAGGAACCGAACATAAACAGCGACGACTCACGTAGCCGAGTTTATAGGTTGAAAGGATGAGCAGCAACGAGTGCTTTGGGTGCGGCCGCACTGGCCACTGGATCAAGAACTGTCCAAATGCTGGACGGGGACGTGGCAAAGGTCGCGGAAGAGGAAAAGATCTTTTCTGTTACCGCTGTGGAGAGCCTGGCCATGTTGCTCGAGACTGTGAAAGAACTGAGGATGCCTGCTACAACTGTGGCAGGGGAGGCCACATCTCCAGAGACTGCAAGGAGCCCAAAAAGGAGAGGGAGCAGGTGTGCTACAACTGTGGCAAGGCCGGCCATGTGGCTCGCGACTGTGACCACGCCAATGAGCAGAAGTGTTACTCTTGTGGAGGATTTGGACACATTCAGAAAGGCTGTGAAAAAGTCAAGTGCTACAGGTGTGGCGAGATCGGCCACGTTGCTGTGCAGTGCAGTAAGGCGAGCGAAGTCAACTGCTACAACTGCGGCAAATCCGGTCACCTGGCAAAAGAATGCACCATCGAGGCCACTGCTTAATCCCATTTCCTTGGTTGCCCCTCCTTTTTTCTGATTGATGGTTGTATTATTTTCTCTGAATCCTCTTCACTGGCCAAAGGTTGGCAGATAGAGGCTAGTCCCAGGCCAGTGAGCTCTTGACACGTAAAAGGAGGAAAGGggtggaaaaagaaaacaaaatttcCACTTTCTtgcatttaatacaaaaaaagtttatgtTTAGTTTGGTAGAGGTGTTATGTATAATGCTTTGTTAAAGAACCCCCTTTCCATGCCACTGGTTAACAGGGATGAATGAGTTTAGTGGAAAGAAATGATGTCGATTCAGTCTCTCCGAGCTCGTCGAACGAAGCCTCGTTGAGAGATTgaggagggggaaaaaagaagTGTGAACTTCTGGGGATGATTTTTGCGTTTGTGGTTTTATCAGTGGGGATGGCTTAGGCTAAGAGTGATTGACCTGGATGAAGCAGTACAGGACTCAGCGGTCAGATCTGTCCGGGCCCAACCAGCAGTACGCAGCTAAGTGGAGAACACATTAATGAAACATGCTAATGACGAGCAAGTTTACAGCACATTCTGAGGataaacatggaattatttcaGAAAACTACATTCTTTGTTATGCGCAAGTTGTTGGACTGTGCAGAGCATATAAGTTGTTCGAGAAATATCAGGTGTATGAACCCATGATTGCAGCGCAgatggaaaaatgaaaataaaaacaaaacttaaaacgcAATATGCGTAGGAGGGATAAATAAGATTTGGAGTTGGGAGTAAAGGTGAATGTTTTCACAgaaatcaaaaatgttatttttgtacAATATCACTTAgactactgtaaaaaaatatcatttgcTTGTACTCAGTTTTTAAGTGGGAAGGTAAATGCAACTGAAGTCCTAGAACATAGAAATGTACTTTTAAACTATCAATAAAGCTGGAGGAAGAAGGGGAGTGAGACTAAAGCTTA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256708 lncRNA downstream 91319 12902937 ~ 12903160 (-) True G189385
TU256704 lncRNA downstream 97871 12894863 ~ 12896608 (-) True G189381
TU256703 lncRNA downstream 103210 12890834 ~ 12891269 (-) True G189380
TU256699 lncRNA downstream 114135 12879945 ~ 12880344 (-) True G189376
TU256673 lncRNA downstream 225768 12768010 ~ 12768711 (-) True G189352
TU256737 lncRNA upstream 31560 13030170 ~ 13032240 (-) True G189402
TU256742 lncRNA upstream 51949 13050559 ~ 13053733 (-) True G189404
TU256761 lncRNA upstream 191168 13189778 ~ 13194807 (-) True G189417
TU256763 lncRNA upstream 208430 13207040 ~ 13210220 (-) True G189418
TU256765 lncRNA upstream 212178 13210788 ~ 13211185 (-) True G189419
XM_022682400.1 mRNA downstream 4211 12983421 ~ 12990268 (-) True LOC111195380
XM_007229620.3 mRNA downstream 13662 12973940 ~ 12980817 (-) True LOC103027102
XM_022682399.1 mRNA downstream 22168 12952510 ~ 12972311 (-) True LOC103034476
XM_022682398.1 mRNA downstream 54019 12926056 ~ 12940460 (-) False nuf2
XM_022682405.1 mRNA upstream 34966 13033576 ~ 13047546 (-) True mkrn2
XM_007229628.2 mRNA upstream 64189 13062799 ~ 13076742 (-) False tsen2
XM_007229629.3 mRNA upstream 64189 13062799 ~ 13076738 (-) False tsen2
XM_022682407.1 mRNA upstream 64189 13062799 ~ 13076521 (-) False tsen2
XM_022682406.1 mRNA upstream 64189 13062799 ~ 13076513 (-) False tsen2
TU256647 other downstream 374913 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 649097 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 950186 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 2003085 10990817 ~ 10991394 (-) True G188898
TU255454 other downstream 3039672 9951985 ~ 9954807 (-) False LOC111195437
XR_002651608.1 other upstream 64325 13062935 ~ 13076516 (-) False tsen2
TU257791 other upstream 2320034 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 2433057 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 3404181 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 3835240 16833850 ~ 16869461 (-) False cass4

Expression Profile