RNA id: XM_007229643.3


Basic Information

Item Value
RNA id XM_007229643.3
length 3161
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC103033524
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13384925 ~ 13395895 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAATTAAGGTCAAACTGGTCATAATGGTAGCTGTTCTTAAGTTTCTGCAGAAACTTTCTCAGCAGAGGAGTTCCTCCTGCAGCAGGCAGGAGTTATTGTGAGTGGTGTGGAGGAGTGAATGGGGAGTTTCCTGTATCGCTGGGCAGATGTTCCAGTTGTGGAGGAGTCTGAAGCTCTCAGTCATCAGAAATGCATCACTTCAGCTCAGCAGGACGACCAGTGACTCACACCGTTCCTGACCCCAGGCTATAAACCCCACTCTGGGACACGCTAGAGCTGAGCTGCAGAGCTGCAGATCCAACAGGGTTGGTCTGAATCCACCCAGAGCACAAACTCTCAACTCCTCACTCTCAACTCCTCACTCTCAACTCCTGAGCTGATTAAACACTGTTCTAAATCTCAGAAACTACAGCTGGAACATGGAGAAGCTGCTGCTGTGGACGACATTCCTCACTGCTGCTCTGAGTGCCGTGTGCTCCACTGTGCTTCAGAGAAGAATGGAGTTCACTGAAGCTATGAATTATCTAAAACAGTTTGGGTATCTGGACACTCCACTGGATCTGGAGGTGCAAGCACACTGGAGCGATGAAGAAATCAAAGAAGCTCTCAGTCTGTTTCAGAGGGTGTCAGAGCTGCCGATCACTGGACAGATTGATGAAGCTACTATTGGGCAGATGAGGCAGCCTCGCTGTGGGGTGGAAGACCCTTTCAACCAAAAGTCCATGAGATACAGGACGTTCGGTGGAgtttggaggaggaggagcctcACTTATCGCATTTATAATTACACCCCTGATATGGGAAAGGCAGCCACCCAGCGGGCCATCCGTTCTGCCTTTAAGTACTGGAGTGACGTCACTCCCCTGAGCTTTAAGGAGATCGACTACGGCCGTGCAGACATCAGAATCTCATTCCATACGAGAGAAGGCTGTCCCTCACCTTTTGATGGGCCAGGTCATGTGCTCGCTCATGCAGAAGCCCCTACCTCAGGGATTGTTCACTTTGATGAAGATGAGTTCTGGACAGAGGGCAAATACTACGGCTCCAACCTACGCATCGTGGCAGCCCATGAGATAGGCCACGCCCTGGGTCTCGGCCATTCCCAGTATAAGAGCGCTCTGATGGCTGCACACTACACTGGATACAAGGCCAACTTCAGACTGCACCCGGATGACATCAGAGGAATCCAGGCGTTATATGGTAAAAGAATCTCGGGTACGACCACAGATGAAAATATTTTCACCTCACACCCAACAACCAACTCGCCTTTTCCCAGAAGAGAGGTTCCAGACCCATGCGATGCCAAACTGGACGCCATAATGCTGGGTCCCTGGAGTAAGACCTTTGCCTTCAGTGGAAACTACGTCTGGACCATCACAGATTTGGGACACAACCCTCCCATTAAGATCAACCAGCTGTGGAAAGGGCTGCCCGGGAACCTGAATGCAGCTGTGTACTCTCAGAGAACCAATAAAACCTACTTTCTAAAAGGTGACAAAGTATGGCGGTATACAAACTTCCAGCTTGACCTGGGATACCCCAAAGAGCTGAGGAGGATCCCAGCAAACATCGATGCAGCTCTGTATTATGAGAAGAACAAGAAAATATTCTTTTTAAAGGGCTCTGGTTACTGGCAGTGGGATGAAATGGCCTACAATGACCTCAGCATCTACCCCAAACCCATCTCCCGCCTTTTCACCGGAGCCCCGTCCAGACCGGACGCAGCGCTCACATGGACCAATGGAAAGGTCTACTTCTTCAAGGGTGACAAGTACTGGCGCATGAGTGACCAGCTGATTGTTGAACCCGGTTACCCCCTCAGCAAGCGAGAGCGCTGGATGAGATGCAACCACTGAGCCACTAGAGTGCAGCAGAGAGCTGAGAACTGCAGTGAGCTCAGGAGGGCCTTCAGTGGCTGGATGACTGACTGTGTGAGGGACATTGTTTAGCAGATGTTCAGCAAATCTTCTGGGGTTTAGAAACGCAACCAACATGATGATTAGAGCATTCATATTGCGGCGTTAGGGAGCTGAGAATGGACAAAGCTTCAGGTTCTCTTTTGAGAAGAGTACCTGTGCTCGGCTCCTGGGGTCTCAGCTCAGTGGTGTTATTTACATGGTCACTAATTTCAGGGAACAAACTTCACAGATTCAGTTTTGTTGATGCACTGAGAAAGAGTTGAAAACACTTGAGAACGTTCTCGATTTCtgtataataatgtgtttattgtagCAAAACTCATGTCAGCACCAAAACCTGCCTATGTAAAGATGATTAGGCTGATAGATGCTCATCCCAGagcttttctttatatttcagAGCAAGGAGCGTCTCACTGGGTTTAGTTTTACTCAGAAATGCAGAGAAGCAGGGCATTACAGAAGAGtttgagttattattattattaggttcTTCTGAACCATGAGGAATATCTCGTAATAACCACATTATAGTTGAAACCACCCTAGAAACCACCCTAGCAACTACCTGGTATAGTACATGACCATGCGAGGTCTGTATGCATGGTAGCTTTTACCTGGTATATCAAAGTAATCACCTAGCCAACATTAGCTAACTTTATTGCCTTAGCAAGTAGCTGGCGTTCCAAAGCAAACACCAGCAATACTTTAGCAAATGCttttgcaaccacctagaacaCCTGGTATGCCAGAGCTGCACTGGATCACCTCAGGAACACCATATCACCCACTTAAAatcatctttctttcttattatatTTCAGAATCCACCTAAAAGATAATAGCAACAAAATAGCAACCACGAGTTTTCTCTACGAGTTTTCCTTGTGATCTCAGGATaagttgataaaaaaatattttatataaaattttgaGATAACgggttttaattattattaactcACAATCTGTCTGAATATCCACAGAAACTTGtgtaaagaaacattttaaatttgtaaaatgtttttgctGTTGCAGGAGGTTTTGGTGATGGCTTCAAAACTCAAATGAagctttattgtttttaattctcTATATTATTCTCTTTTCATTATCTcagaattataaaataaaccacacccTATAATTAATCATTTCAGGTTTGATTTGatacatatgtatgtataaatttgTAGaagatgtttacatttttaacaactaataaattttacacaaaagaa

Function

GO: NA

KEGG:

id description
K07998 MMP19, MMP18; matrix metalloproteinase-19 (RASI)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256814 lncRNA downstream 50015 13333460 ~ 13334910 (-) True G189455
TU256805 lncRNA downstream 68980 13315709 ~ 13315945 (-) True G189448
TU256768 lncRNA downstream 140941 13243581 ~ 13243984 (-) True G189422
TU256765 lncRNA downstream 173740 13210788 ~ 13211185 (-) True G189419
TU256763 lncRNA downstream 174705 13207040 ~ 13210220 (-) True G189418
TU256863 lncRNA upstream 52346 13448241 ~ 13448525 (-) True G189490
TU256867 lncRNA upstream 56259 13452154 ~ 13456427 (-) True G189494
TU256868 lncRNA upstream 58798 13454693 ~ 13456427 (-) False G189494
TU256895 lncRNA upstream 76730 13472625 ~ 13485558 (-) True G189509
TU256927 lncRNA upstream 150635 13546530 ~ 13546899 (-) True G189522
XM_007229637.3 mRNA downstream 102452 13148196 ~ 13282473 (-) True LOC103031721
XM_007229634.3 mRNA downstream 252829 13085029 ~ 13132096 (-) True pparg
XM_022682408.1 mRNA downstream 261938 13085029 ~ 13122987 (-) False pparg
XM_007229635.3 mRNA downstream 264492 13085029 ~ 13120433 (-) False pparg
XM_007229633.3 mRNA downstream 271741 13085029 ~ 13113184 (-) False pparg
XM_022682831.1 mRNA upstream 63840 13459735 ~ 13465405 (-) True LOC111195441
XM_007239755.3 mRNA upstream 97681 13493576 ~ 13533622 (-) True gdf11
XM_007239756.3 mRNA upstream 97681 13493576 ~ 13533621 (-) False gdf11
XM_007239754.3 mRNA upstream 161127 13557022 ~ 13572611 (-) True LOC103026383
XM_022682832.1 mRNA upstream 855569 14251464 ~ 14255472 (-) True LOC111195442
XR_002651608.1 other downstream 308409 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 765359 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 1039543 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 1340632 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 2393531 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 1922749 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 2035772 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 3006896 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 3437955 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 3792770 17188665 ~ 17193747 (-) False irf6

Expression Profile