RNA id: XM_007234736.3


Basic Information

Item Value
RNA id XM_007234736.3
length 2923
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC103042624
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23624910 ~ 23635826 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTTCCTGCGCCATACCAGTTTACCGCCACGGTCCGGAGCGGCGCGCGGGGGAGCACACCGACCGAACTACGGCGTTTAGCGTGCAGTAAAACCGACAGCGGGACGCGGGGTGTGTGAGATACGGAGTTGGGGTGGTTGTAGGATCATATATTTGTTTCAGGTTAGAGGAGAGCGGGAGCGGAGCGGGGACGGAGACCTGCGGACACACCGTCAGCTGAACACGGGCTCGGGTTAAACACAGGCCGCGGTAACACGATCATTGGCATCATGGCTGACGACTTTGACATTGAAGCAATGCTTGAGGCACCATTTAAAAAGGATGAGACCAAGTCCGTAAATTCCAATGGCCATGAAGAGCGGAGCAAGAAGAAAAAGAAGAGCAGAAGTCGTAGCAGGAGTAGGGACCGAAAAAGAAGCAAGAGCCGGGAGCGCAAAAAGACCAGGAGCCGGGAGAGGAGTCGGGAGCGCAAGAGGAGCCGTAGCCGGGAAAAGAAGCGCAGCCGGAGCCGGGACCGGCGCCGCAGCCGCTCCAAAAGCAGGGAACGTGGAGGTCGTTTCCGCCCAACCTTttctgGCCTGAAATTTAACGGTGGTTCCAGGGGGAAGACTGGCCCACCACCTGCCGTCAAACTAAGCCGTCGGCGATCTAGAAGCCGCAGCCCTttcaaaagagagaaaagtccCATTCGgcAACCCATAGATAACCTCACACCAGAGGAGAGAGATGCACGCACAGTTTTTTGCATGCAGCTTGCTGCCAGAATTAGACCTCGGGACCTGGAAGAGTTCTTCTCTGCTGTGGGAAAAGTGAGAGATGTGAGGATGATCTCAGACAGAAACTCCAGAAGATCCAAAGGAATTGCCTACATTGAATTTGTAGACTCCACATCTGTGCCTCTGGCGATTGGCCTCTCTGGACAAAGGCTGCTAGGAGTACCCATCATTGTTCAGGCTTCACAGGCTGAAAAGAACAGAGCGGCTGCGATGGCCAACAATCTGCAAAAAGGCAGTGCTGGACCTATGAGGCTTTATGTTGGCTCCCTTCACTTTAACATTACAGAAGACATGCTCAGAGGAATATTTGAACCTTTTGGACGGATTGACAGCATTCAGCTTATGATGGACACTGAAACAGGGAGATCCAAAGGATATGGCTTTATTACATTTGCTGATGCTGAATGCGCTAAGAAAGCTTTGGAGCAGCTCAATGGCTTTGAGCTGGCTGGTCGGCCAATGAAAGTTGGTCATGTGACAGAGCGCACCGATGCCTCTACAGCAAGTTCATTCTTGGATAATGATGAGCTGGAGAGGACTGGCATTGACCTTGGTACTACTGGAAGGCTGCAGCTCATGGCCAGACTGGCAGAGGGTACTGGTCTGCAGATCCCTCCAGCTGCACAGCAGGCTCTTCAGATGAGCGGCTCCATGGTTGCAATGGCTGCAGCTACAGCGGCCATGAATCCTGGATTAAGTTTTAATCTCAACATGCCCCCAAATCAAGCTTTAAATCTACCATCTCAGCCAATCGCCACGCACTGCTTTCAGCTCTCAAACATGTTTGACCCACACTCAGAGAACGATCCTGGATGGGATATCGAAATCCAGGATGATGTAATTGAAGAATGTAACAAACATGGCGGTGTCATTCATATATATGTAGACAAGAAATCTGCAGAGGGGAATGTATATGTGAAGTGTCCGACAATCCCTGCTGCAATGGCAGCGGTTAGTGCATTACATGGCCGTTGGTTTGGAGGTAAAATGATCAAAGCTGCATACGTCCCTCTGCCAACATACCACAATCTCTTCCCTGAGTCGGTGCAAGCAACACAACTCCTCATGCCAATTCGCCGGTGATCCTTTCCCTCATCCCtgaagctatttttattttcagccTTTCTCTTTTTAACTCTTTGGGTAAAATATTCATATTCCAGTCCTGCAAGCTATGACAGTTTCTTTTCGAACTGGAGTTCAAGAGGTTTAAGTTTCATCTTAATGTGCCCATATGTTTTTTGGGCATCAGAGAAAGGAGTTGtggttggtttgtttgtacagttttttttttttttttgtttttgggggGTTGGTCGGGGTTCAGAGGGGGCTTTTGAACTTTGTTGATACAGGTTTCAAATTTTGTTTTCCTCAACATATATTGTCTTTGTGATTGATCAATCATTGTGGTGATTGATTGGCATGAGTTCCACTTAAGGAAATGTACAGTTAGCCTCTCAAAACTAAAATGTTGAGTCTTTTTGAATGAATTGAAAATCCTGCAGATTGGCTAAATATCTACAAAATCTGTGTTTTGGGCTCTGTGAGCTGTGGGAACTAAGTAGGTGATGAGAGCCTGTATGTTCGTAGAGAGGTTTCAAAGCATCTTGTTTTTCTAATGCAGATTTGATTTTGTAAAGTCCTTGAAAAGTTCATTTCAAATAAAGCCATGATGCTGAAAAAAGTGTGAGGTGTTTGCAACCTGTTTAGTTAAAATCTAGCAATCTTGAGAAACGAAGAGTGCTTTctgttttaaaagaaaacataagTGTAAAGAGAGTTGCGGGATAAGAAGAGAATGTCGTCTCTACTTTCAAGAGAGAGTATGTGAAATCAGCTGGACATGTTCTAGAGCAGTGATGAGGTTCCAAAATACTTGTTACTGCTTTTCCTTACTGCTCTCCAACTTTGCCTTACAACATTAACTTGTTAATGTGTTCAGCTAATCTGTAAACTTTAACACATTAACTTTgccttttatttatgttaaagttttgctctctttcacacacttgTTTAGTCATGCAAACAATCTCTGttaacacacacagctgatgacATGTTTCCTTTTTTAAGATGTTGAAGGTGGAACATGGATCTACACCAGCGTTTATTTTCTTCAATAAAACCCTCAGTTAAACTTA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261126 lncRNA downstream 17879 23602319 ~ 23607031 (-) True G192439
TU261101 lncRNA downstream 65734 23544535 ~ 23559176 (-) False G192428
TU261089 lncRNA downstream 76474 23545179 ~ 23548436 (-) True G192428
TU261099 lncRNA downstream 76474 23545179 ~ 23548436 (-) False G192428
TU260993 lncRNA downstream 295597 23329074 ~ 23329313 (-) True G192365
TU261196 lncRNA upstream 240809 23876635 ~ 23884538 (-) True G192484
TU261312 lncRNA upstream 356370 23992196 ~ 24034791 (-) False G192574
TU261313 lncRNA upstream 356370 23992196 ~ 24034791 (-) True G192574
TU261314 lncRNA upstream 356370 23992196 ~ 24049734 (-) False G192574
TU261318 lncRNA upstream 419468 24055294 ~ 24055585 (-) True G192578
XM_022682676.1 mRNA downstream 2792 23609253 ~ 23622118 (-) False nfs1
XM_007234740.3 mRNA downstream 2792 23609253 ~ 23622118 (-) True nfs1
XM_015601696.2 mRNA downstream 342891 23208885 ~ 23282019 (-) True LOC103047010
XM_007234744.3 mRNA downstream 462491 23159668 ~ 23162419 (-) True LOC103045076
XM_022682663.1 mRNA downstream 480502 23104254 ~ 23144408 (-) False c22h1orf106
XM_022682677.1 mRNA upstream 12440 23648266 ~ 23660292 (-) True LOC103041805
XM_022682678.1 mRNA upstream 12440 23648266 ~ 23658180 (-) False LOC103041805
XM_022682679.1 mRNA upstream 37282 23673108 ~ 23680391 (-) False LOC103042306
XM_007234734.2 mRNA upstream 37282 23673108 ~ 23680391 (-) True LOC103042306
XM_022682680.1 mRNA upstream 46383 23682209 ~ 23696247 (-) True LOC103041505
TU260862 other downstream 566105 23054633 ~ 23058805 (-) True G192251
TU260753 other downstream 835955 22786334 ~ 22788955 (-) False LOC103041653
XR_002651631.1 other downstream 902005 22711022 ~ 22722905 (-) False amhr2
XR_002651628.1 other downstream 1262453 22349347 ~ 22362457 (-) True alas1
TU260341 other downstream 1773268 21846969 ~ 21851642 (-) True G191862
TU261664 other upstream 1575849 25211675 ~ 25217550 (-) True G192815
TU261852 other upstream 2239084 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other upstream 2239084 25874910 ~ 25878653 (-) True LOC111195415
TU262021 other upstream 3395837 27031663 ~ 27033089 (-) True G193097
TU262199 other upstream 3789216 27425042 ~ 27476869 (-) False LOC103046149

Expression Profile