RNA id: XM_007234744.3


Basic Information

Item Value
RNA id XM_007234744.3
length 2752
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC103045076
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23159668 ~ 23162419 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGAGATAAAAAGTTATAAGCTTGAGTTGTAAATGTAGTGGAGTTATTTAGTGGAATTAAGTACTTAATTAAATTTATATCATTACTGTCCAGAACTGCAGGTAAGATAAGTTGAATCAGCTAGATAAGTTTGATAATTGAGTTGATTGATTTGATGAAGAAAGTGCGAGATAAGCAAGATGCTTctgacaaacagagagagacagcaggtCAACAGAAACGAGATGTTGCAGTTGTGGTTTGTAAGCATGTGACTGAATGGGTTTTCTTTCCTTTGCCAGTCTGAAGAGCACAGATGGCACGCAGCAGCACCTCAGCAGCCTTGTCTCGACACACAATGGACAACTCAACCCCCAGCCCATACGAGTACGACTACAACTTCAGCGGTGATGATGATTTGAATGACACCAGCACCACCGAGGTTCTGTACATGTCCCACGTCTACCTGCCCATGCTTTACTTTATCGTGTTCTTTGCCGGATTCTCAGGCAACCTCTTTGTGCTTATTGTCATTGGCAACCGTCACAAGAGGAGCAGGCGGCTGGTGGACATCTTTGTGCTGAACCTGGCTCTGGCTGACCTGGTCTTCGTCTTCACCCTGCCTCTGTGGGCCGTTGCAGCCGGGCAGCACCACCGGTGGCCCTTCGGTAGAGTCATGTGCAAGATCAGCAGCTACATCATAGCTGTCAACAGGTTCTCGAACATATTCTTCCTCACCTGCATGAGTGTAGACCGCTACCTGGCTGTAGTACGCCTCATGGACTCCCACGTCCTCCGCAGTAGCAGGTGCGTACACCTTACCTGCGGGGTGGTGTGGGGAGTGTCTCTGCTCTTGGGGGTGCCCTCACTCGTCTACCGACACCTGAGTGAAGAAGATGATGGCAGTTCCTGCATCGACGACATGGACTCGCTCTTCTTCAAAGCCATGATCCTGCTGACCGGCTTCCTCACATTCATGCTGCCTGTGCTCATCATCGTCCTGTGCTACGGATCCATCCTGGCCAAACTGCGCAAGCACTCCATCTCCGCCGGGAACCAACGAGCCGAAGCCAGGCGCCGACACTCGCTCAAGATCGTCTTCACCATCATCACCGCATTCCTGGTGTCATGGCTGCCGTACAACGTCTTCAAGACCATCCAGGTGATCTCCAGCATGAGCGACACCAGCCTGGGCGACGCCGTTCAAGAGAACCTGAGCCGAGGGCTCATCATCTCCTCCTGTCTGGCCTTCGTCAACAGCTGCATCAATCCCGCCATTTACCTGTCGCTGGATAAGCATTTCCGGCGTAGCGCCGCGGCGCTGTGCCTGAACTGCCTGGGTCACGGAGATGCACAGCACAGCTACGTCTCCTCCAACTCCTTCTCCAACGCCACGTCTGAGAGCCTGGGCAGTGTGCCCAGCCGTGGGCGCCTGTTCTCTCTAACTCAGAAGACCTGAATTGGACTTTAGGCCTGACCTGTTCATGCATTATTCACTTACAGCTTCAGCGTTTAGCGCTTTTTTAGAGGAATGCTGTAAAACATTGACCTCAAACAGAGATCGGTTTTCAATGGTACGTATTGTAAagtttttatcagattcatAACAAACCTTTTAATATATTCACGCTTTTAAGCACGTCAGTTTCCGAACAAGTCTGTGATATACTGTTATGAGTCAAGAGACTTTTTTCATTCAGGTTCTTTATGAGCATTACAAGAcatttacagcttttaaatgtggTTTTCTGAGCTCTATCTCTAAATTGCAGAAGGGAAACGTGCAAAACCCCCAACGGCGCCCCAAGCCCTTTCCTCTCAGACAGCTTCAGACAAGTCAGTCACAGCTgggattttttaaatgtgcatttAAAATACAATCTTGCATTTGACTCAAACACTGATTTGCtaacaattttaaatgttttattttaagcttaTCTAAACCCCACAGGGTTTAATCCTAGGTCCTGCGAACattttaaagataaagataaaactaTCTGAGCTACAGGGTCTAAGGGGTGGGGCTGTTTTAAACATATCCTtgttttaatatatactgtaggagataaaaataaaaaaagaaaaatcgaaaaagaaaatgataataataatattccaaaataaaaaccttactgtctttttttgttgtctATAGTGTTTTAGAATAGTAGCAGGTTTACTCTCACCAATGTGAAAGCATTTATGTACATAGAAATAttgtgaatattttatattttagcatattttttttcatacagggttctatttttattagatataaaatgtattttaattattacaattCTATCATTTTAAAAGGGAAAACAATATGTGCCAACAGGTTAAACTGTTCTAATTATACCTTtggttttaataatttaattattaacctttggtttaaaaataatataatataataataatattctacaAAAACAACTAttctaatataatgtaatacttttttgttactttatgATAATGGAAAGTCTGTCAGTCTGATCTGTGCTGTTACTGCTGGTTATGCACACCTTTCATTCAATTCCTTTCATTTCATGTTTACTTTCACTAATATATAATCCAatgcattcatttaaaatgattttctacttgttttctttgtgttgttttaattttgCAATATTGTATCAAATCAgtcttttattttgtcttgtcATGTATTTATGCTCTGTAGTGTcagtgatttattgatttgtgATTTGCTGTGTATTTTCTGTCTGACATcgaataaaactataaaacaga

Function

GO: NA

KEGG:

id description
K08405 GPR25; G protein-coupled receptor 25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260914 lncRNA downstream 4626 23154582 ~ 23155042 (-) True G192293
TU260909 lncRNA downstream 54041 23105108 ~ 23105627 (-) True G192288
XR_002651658.1 lncRNA downstream 58680 23098838 ~ 23100988 (-) True LOC111195460
TU260851 lncRNA downstream 128598 23030652 ~ 23031070 (-) True G192240
TU260841 lncRNA downstream 196859 22961247 ~ 22962809 (-) True G192232
TU260961 lncRNA upstream 53171 23215590 ~ 23223369 (-) True G192335
TU260962 lncRNA upstream 53757 23216176 ~ 23224603 (-) True G192336
TU260993 lncRNA upstream 166655 23329074 ~ 23329313 (-) True G192365
TU261101 lncRNA upstream 382116 23544535 ~ 23559176 (-) False G192428
TU261089 lncRNA upstream 382760 23545179 ~ 23548436 (-) True G192428
XM_022682663.1 mRNA downstream 15260 23104254 ~ 23144408 (-) False c22h1orf106
XM_022682664.1 mRNA downstream 29982 23104254 ~ 23129686 (-) True c22h1orf106
XM_022682662.1 mRNA downstream 29988 23104254 ~ 23129680 (-) False c22h1orf106
XM_007248420.3 mRNA downstream 61104 23087526 ~ 23098564 (-) True rnpep
XM_015605622.2 mRNA downstream 61108 23087526 ~ 23098560 (-) False rnpep
XM_015601696.2 mRNA upstream 46466 23208885 ~ 23282019 (-) True LOC103047010
XM_022682676.1 mRNA upstream 446834 23609253 ~ 23622118 (-) False nfs1
XM_007234740.3 mRNA upstream 446834 23609253 ~ 23622118 (-) True nfs1
XM_007234736.3 mRNA upstream 462491 23624910 ~ 23635826 (-) False LOC103042624
XM_015601693.2 mRNA upstream 462491 23624910 ~ 23635826 (-) False LOC103042624
TU260862 other downstream 100863 23054633 ~ 23058805 (-) True G192251
TU260753 other downstream 370713 22786334 ~ 22788955 (-) False LOC103041653
XR_002651631.1 other downstream 436763 22711022 ~ 22722905 (-) False amhr2
XR_002651628.1 other downstream 797211 22349347 ~ 22362457 (-) True alas1
TU260341 other downstream 1308026 21846969 ~ 21851642 (-) True G191862
TU261664 other upstream 2049256 25211675 ~ 25217550 (-) True G192815
TU261852 other upstream 2712491 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other upstream 2712491 25874910 ~ 25878653 (-) True LOC111195415
TU262021 other upstream 3869244 27031663 ~ 27033089 (-) True G193097
TU262199 other upstream 4262623 27425042 ~ 27476869 (-) False LOC103046149

Expression Profile