RNA id: XM_007237534.3


Basic Information

Item Value
RNA id XM_007237534.3
length 2035
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC103047032
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 269750 ~ 278183 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCTCCCCCTGAAATCATTGGCTTTCTGTGATCCTCATCAGTGTCGTCTCCTCTGTGCTCTCTCAGTCTGAGCCGACCCGGTGTGGAGTAACTCTACAGGCACGATGGTGTTTTTCAACAGCATGTGGACCGTGCTAGCTTTCATCACATTCGCTACAGTCCTGCTGCTATCAAACTCTTGCTCTGCAGcAAAGTCAGAGCTGACAGTAACTACAATAAAGCAAGACCCGTACACCATGCTGAAGGGCTCTCAGCTGGAGGGATACTGTATGGACCTGCTGTCTGAATTAGCCAAGAAACTGGGCTTCAAGTATAAAGTTCATCTGGTGAAAGACGGGTCGTACGGCCGGCTGGACGAGAGTGGAAACTGGAATGGGATGATTGGAGAGGTGGTGAGGGGGGAAGCGGATCTTGCCGTAGCTCCTCTAACGCTGACCGCAGCTCGAGAGAAGGCAGTAGGAATGACCAAACCCTACATGCAGACGGGTATCAGCATCCTCATGCGGCGGGACATCACCTCAGAGGATTCCAGCATGTTCGACTTCCTCAGTCCGTTTTCTGGAGAGACCTGGTTCGGGATCCTCGTCGCATACATCCTGACCGCAGTCTGCATCTGCGTCGTAGCCAGAGTGAGCCCTTGTGAATGGAGTCAGCCTGAGAGCGAGCAGAACCCCTTCACCCTCCTGCACAGTCTGTGGTATATCGCCGGAGCTCTCAGCCTGCAAGGTGCAGGTCCTCACCCCAGGTCTCCATCCGGCCGTGTGGTCAGCTGTACTTGGTGGCTCTTTGCCGTGGTGCTGCTGGCCTGCTACTTCTCCAACCTGAGCTCCAACCAAAGCTCAGACTCTTCACACCTCATGATAAAGGGCTTTGAGGATCTGGCCAATCAGGACATAATCGAATATGGAACACTGGCTGGATCTTCAACACTGGCTTTCTTTAAGAATTCAAATAATCCTTCCTACCGCCGCATCTATGAGCACATGGAGAGACGGAAGAGTTTTGTATCATCAATGGATGAAGGTGTTCAGAAGGCACGGGATGGAAACTTTGCTTTTATTGGGGAGTCAGTATCGCTGGACCTCGCTGTGGCTCGTTACTGTGAGCTGGTTCGAGCCCATGAGGTTATTGGAATGAGAGGCTACAGCATCGTGACTCCTCTGAACTTCCCCATGCTGAAGAACCTGAGCGTAGCCATCCTGCAGCTGAGTGAGGCAGGTGAGCTGGCCTATCTGCGCAGTAAATGGTGGGCCAGCAGCTGCATGGCTCAAAGTGCTAAAGGTTCATCACTAAGGGCCCAAAGCATGAAGGGAATTTTCCTGGTGCTCGCTGTGGGTCTGGGGCTCGGGGTGCTGCTGGCTCTGCTGGAGCTCACCTCCAAATCCCGGAGCAGAGCCCAGGAGCAAAAGAAGTCCTGCTGCTCTGTTCTGACCCAGGAGCTCAGTCAGCGTCTGAGAACAAACAGCCCAAAGCGAGAGCCGGAAACCTCCGAGAAAAACAAGGCCTGAAGTTCTCGCTTCCTTAATTTACTAATTACAGCCGGGACCCTTTCACCGCCCAGAACAGAAACTCTATACCTGTAAAAGCCTAACTATCTGCACTGTGGCATAGATTCATATTAGCAGTAGTACATACCTCAAGCTGTACATCAGTAATTAGAGTTTATACACTCTCTAAGTGTGGGAGGAAACCTGGGGGACTAATCAAAAGcgactaatataaataaaatatacctgCTCTAATCCTGTATACCTAACCTCTCATCTTCTCTTGTATGTTCAAATATAATGCACTTTAgtaatcaaatatatatttaaatcattttatagaAGTTATGAATCTATATCAAAAGTGCCTATATACTATAATAAGATTCAAGGAGTTCAGACAGAATGTGTTTATCTGTGCATTGTTTCATCTTAAAcacatcattaaaaacatttacatcaCACAAGATAATGTACAAAAAGCTCCTTACAGTAACAACTCTGGCACATtgtaattaatgaaataataaataaaatttaaccaAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252524 lncRNA upstream 15720 221116 ~ 254030 (+) True G186264
TU252495 lncRNA upstream 90972 177894 ~ 178778 (+) True G186241
XR_002651651.1 lncRNA upstream 155404 113390 ~ 114346 (+) True LOC111195451
XR_002651650.1 lncRNA upstream 155404 113800 ~ 114346 (+) False LOC111195451
XR_002651649.1 lncRNA upstream 160576 107081 ~ 109174 (+) True LOC103041000
TU252548 lncRNA downstream 15272 293455 ~ 294062 (+) True G186279
TU252687 lncRNA downstream 35777 313960 ~ 340818 (+) True G186368
TU252694 lncRNA downstream 144720 422903 ~ 423811 (+) True G186375
TU252714 lncRNA downstream 217521 495704 ~ 498408 (+) True G186385
TU252734 lncRNA downstream 280769 558952 ~ 563539 (+) True G186401
XM_007237531.3 mRNA upstream 20863 243272 ~ 248887 (+) True LOC103046213
XM_022682170.1 mRNA upstream 28025 230017 ~ 241725 (+) False LOC111195348
XM_022682171.1 mRNA upstream 30011 221827 ~ 239739 (+) True LOC111195348
XM_022682167.1 mRNA upstream 51290 200368 ~ 218460 (+) True LOC103044480
XM_022682166.1 mRNA upstream 51290 202824 ~ 218460 (+) False LOC103044480
XM_022682176.1 mRNA downstream 164281 442464 ~ 457409 (+) True lactbl1
XM_022682177.1 mRNA downstream 164281 442464 ~ 457409 (+) False lactbl1
XM_022682179.1 mRNA downstream 191880 470063 ~ 472044 (+) True LOC111195351
XM_007251508.3 mRNA downstream 197212 475395 ~ 492764 (+) True smarcd1
XM_007251509.3 mRNA downstream 216890 495073 ~ 505040 (+) True gpd1
TU252478 other upstream 154663 107396 ~ 115087 (+) True G186231
XR_002651586.1 other downstream 232392 510575 ~ 538216 (+) True cers5
TU253378 other downstream 2702314 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 3114204 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 3645269 3923452 ~ 3923662 (+) True LOC111195456
trnae-cuc_2 other downstream 4511793 4789976 ~ 4790047 (+) True trnae-cuc_2

Expression Profile