RNA id: XM_007247722.3


Basic Information

Item Value
RNA id XM_007247722.3
length 5480
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC103026702
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 28030686 ~ 28048695 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaagaagcgaTTCAGCCGCGAGTCGGGACAGGAAGCCTGAGTCGAGCAGCTGATAATCGGACTGGGGATGTTCCGGTGAGAGGAGCTCGTCTCCTTTAGGCTGCTGCTGTGGGTCGGCTAACGGCGAGCTAACAATGAAGGCCTAAGCCGACAGCCCCGGGATTTAAACCTCTCCGAGCTGGCTGACCAAACGAGGACAAACACACGCAGGCATGGCCTCCCAGCTGCAAGTCTTCTCTCCTCCGTCCGTGTCTTCCAGTGCCTTCTGCCGGGTCAAAAAGATGAAGGTGGAGAGCTGCGCTTGGGATGCCTCCGGTGAAGCCTACGGCTCTGTGGGCCAAGCCTACGGCTTCAACCCTGCCCCAGCTCTCCCTTTCAACACCTCCGGCCTGGTCTTCCCACCGCCTCCCGGTGCCAAGGTGGTGGTCCGTGCCGCAGACAGTACGGGGGGAGCACCGCAGGGCTCCAGCCGCCGGCCCACAGACACGCATGTGTCCCGCAGCCAGAGGTATGGTGTGAAGCGGAAGAACGAGGAGGTGGATCGGTCTGGAGGCGGGGGCAGTGGCAGCGGAAGCGTGCAGATTCTGGAGGAACTGTCTGCCCCGGCTTACTCGGGCCGTGCTGCCGGCGGCAACACCACCCAGTCCATTCCCCACTCTGCTCCCACCACCAAGAGCAGCAGCTCCAACGGCGAAGGGGACTACCAGCTCGTCCAGCATGAGATCCTCTGCTCGGTCTCAAGCAGCTACGAGGTGCTGGAGTTCCTCGGCCGGGGTACCTTCGGGCAAGTGGCAAAGTGCTGGAAAAGGGGCACCAATGAAATCGTGGCCATCAAAATATTGAAGAACCATCCTTCATATGCACGACAAGGCCAGATAGAGGTGAGCATTTTGAACCGTCTAAGTGCAGAGAACGCGGATGAGTTCAACTTTGTGCGCTCGTACGAGTGTTTCCAGCACAAAGGCCACACATGCCTGGTGTTTGAGATGCTGGAGCAGAACCTCTACGACTTCCTGAAGCACAGCAAGTTCAGCCCCCTCCCTCTACGCCACATCAGACCCATCCTGCAGCAGGTGGCCACTGCCCTGATGAAGCTCAAAAGCCTCGGCCTGATCCACGCCGATCTTAAGCCAGAGAACATCATGCTGGTGGACCCCATCAGGCAGCCCTACCGGGTCAAAGTCATCGACTTTGGATCGGCCAGTCACGTGTCTAAGGCGGTGTGCTCTACTTACCTGCAGTCTCGCTACTATAGAGCTCCTGAGATCATTCTTGGCCTGCCGTTCTGTGAAGCTATCGACATGTGGTCACTGGGCTGTGTGATTGCGGAGCTCTTCCTCGGATGGCCGCTGTATCCCGGAGCTTCTGAATATGATCAGATCCGGTACATTTCTCAGACCCAGGGACTTCCAGCAGAGTATTTGCTTAGTGCTGGCACAAAGACCTCCCGCTTCTTCCACAGAGGGCCTGACTCCAGTTATCCACTGTGGAGGCTGAAGACTCCATCAGAGCATGAGGCAGAGATGGGCATCAAGTCCAAAGAAGCGCGAAAGTACATCTTTAATTGCCTGGATGACATGATGCAGGTCAACCTGTCTTCTCACTTGGAGGGCACCGACATGCTGGCAGAGAAAGCAGATCGGCGGGAGTTCATTGATCTGCTAAAGAGGATGCTCCGTTTGGATGCTGACAAAAGAATCACCCCTACCAAGACCCTGGCCCATCCCTTTGTCACCATGAGCCATTTGCTGGACTTcccccacagctcccaTGTAAAGTCATGTTTCCAAAACATGGAGCTGTGTAAGCGGAGGAACAGTAGCTACGATAATGGGAAGGCTCTTTTTGCTGCTAATACTGTTCCTGGCACAGGGGGCAACCTGACGGTGACCTTCAGCAGTCAGCTTAACCAGAACAACCAGGTTCCTTCAGCCGGTGGAGCAGTTCCTCTCCTCAACTACCAGCCAGCCCTTTATCAACAGGCCACGATAAACATCCCAGGCCTGGCCCAGCCCACCATCCCCCTGCAGACACGCCCCCCTCAGCTATGTCCCCAAACTGAGCCCTTCCAGCAGACCCTCATTGTCTGCCCACCCACCACCATACAGGGGCTTCCGTCCTCCAGCAAGACCTCCAGCTACCCGGTCAGGATGGAAAACGGTGTTCCTGTAGTCCAGCAGAGCCAGAATACTCAGCCTCTCCAGATTCAACCAGGAATGCTGACGCAGGGATCCTGTACACCGCTGATGGTGGCCACATTGCATCCCCACGCGCCGGGCGTGTCATCTCAGTACCCGCTGCCCCTGGCACTGGGCTGTGGGGCAGGAAGGCCTtctctgctggagcagacagCCACCGTGCTGCAGGCCTGGCAGACGGGCACGCAGCAGATCCTCCTCCCCCCTGCCTGGCAGCAGGTGCCAGGAATGACCCTTCATGGCACGGGCGCAGCACAAACCATCACAGAATCGCCCTTGGAGACCATCCTCTCAGACAGCTCCACGCAGCAGACGCCCACCTGGAGGGCATCTCACAGTACAGTTCTCCAGCAGAACCCTCATGTTTTGGACTCAACTCAGTCCCTCAACCGCGGAGTGTCTAGCGCTGCTCGGTCATCGCAAAGCAAGAGGAACAGGGCTCGCTGCATGGACAGCAGCAGtgGTCTGGTTGGTGCGTCTTACAACAGCGCTGCCCTGTCTCAGCCGATCATCATCTCTGACACACCCAGCCCTGCTGTCAGCGTGATCACAATCCACAGTGATTCTGATGAGGAGGATGAGAGGAAGTTCCACCCTGCCAGCTGTGGACCTAATCAGAGAGCCAACGTCATCAGCTGTGTGACCGTCCACGACTCTGACTCCTCCACTGCTAGCCCCCTGACCCCCCTGCCCCGAAATGGCCTGGCAGCTCAGTCCTTGCGCCTGGCGAAGTCCTTGGCAGTTGTTGCTCCCTCTGTGAAAATCCAGCTAGGAGACAGCTCGGCACTAGCCAAAGTAGCTACAGGAGTTCTGCAGAGTTCCTACATAAAGCCCAAAAGGGCAGCAACACGGCAGCCATGCAGCTCAGGGGAAAGTGTCGGTCGCCAGGAGCCTAGCAGGTCCCAACCACTCAACCTGAGCCAGACCACGGTCTCATCATCTCAAGACCACACTAGTGGCTCCACACTGCGCCGGCAGCAGACCTACCCGCCTTCCTCCTCCCAGTACCGCCTCCAAGAGGCCCTGCCATTCACCAGCGCCCCTAGTCTGTACACGTACCCAGCGTCCGCAGCACTGGCCTCTGCCTCGCACACCATGGAGCAGCTGCTCGTCCAGGGCTCCTCCCCTTCCATCCACGTCCCGCCCACCAGTCACTATGCAGCCAGTCTTATCCCGAAAGACTCGGTGGGCGGCGTGGTCCACGGATTGCCCGCCCACTACCAGCAGCATTTCCCTACCCACCCTTATGTTGGCgcaaacaccagcagcactagAGGAAGTGCGGCCTATGGTGGCTATCAGCTCAGTCCTAGAAGAGTTACTCACTACCCGTACATATGAGGTGAGGCACATAGTAGAGAGGGCTGACTGAGGCGTAGTTACCAACCGAGATAGGACCACATCCTTCTTATAGACTTGCCATTGAAACTGCTGCGACATTAACTGCTATTACCTATTATTTAATTGaactattttagttttttttttttttagttttttttttttaaggttgacatttagaaatattatattttaccgGTCTCTGTTTGTATCCTTCCTCTGGAAAAGAAGTTCTGTTATCTGTTAGGGTCAGATTTATTTTCCTAGCACAATACATGTGGTGTGGTGACGTGGTGTTGAAAAAAGATGTTCATTAGCAATAGCGAGACACTATTAAAAGAAAAGCTGACACACAAAAGGGACGGACAGCTGGATCCTGGAACAGCACGACCCCCGTAGTTCATTTATGTACTACTAAATGTACTACTAAAAGTTCCACACTAACCCTGTAAAACCCTGTAATCCACTTTTGTcgattccccccccccccttgttagcttttagcatttttaatgttttgtgttttaatgttttaggtCCCACACTCTCCTGTTCtattgtttttaatcattttaaattatgttccactgttggttttattttactaatttactGGACGATGTGTATTGAAGTGACtgaaaaggaagaagaagaagaagaagaaaaaaaacgagTATCAGGAGTACGTGTGCGTACATGTAAGAGTCCACGCGCCTCCTTTACTATTTAAATCAAGACTTAAGTGTTAGTTGAATACGACGAAAGGCAAGGTAGGATTGTAGGAAGAGTTATGTTGTGCtgaaagtaaaatgataaaatgattgaTTAATAGAACTCGACCGATTTATGGGTTACTTGTCTTTAGAGTTGTTTTAATCTTGTTAAACCTTATGAATTCCTctggagatttaaaaaaaaaaaaaaaaaaaagcaagcctATACTTAAACTGTGATCATGTCAAAGCCAATGAATCAACAAAAATATGTACTGACAAAAATAATTTcccttgcctttttttttttttttttttttttaatgattcatTATGGCTTCTGAAAAACCCCGGTTTTCATCCTGTCTATCCGTTTGCTGAATTGATGTGCTGTTATGGTTCTTCTAATGCTGTTAGGAGTAGAACTTGTTTAGCAAAATGAACTAATTAACACCAAAAAAATGTCCAGTCAAAAAATCCAGGGTTCTGAGTGAACTTTTgagcatttttatttgtattttttttttttttttttttttttgctaatgccCCGTATACCTGCATCCTTTACTGAGTCTGTGTTTACATGCAGTCAGAAATCCgttcataatctgattactgcagttaTACTCTGATGTATAATTTAGGTCAGAGTAAGATTTAAGAATCTGGTCGAGGATGGACGCTAGCTCAGTAATGGTATTTCTTAGTGCTTGTAAACTCTAGTATTCTTGGATTTCTCAGTCTGTACACTCGTGAAAACAGACTGTGGTAGTGGAAAAAGCAAGTTTTCCCATTATCTGATGACCCAAGCTCATGTAAATGCATCGATCAGATTACAGAAGGTCCAGCATTTTGTAGTAATCAGATTttgaagtgcatgtaaacacactccgGATAAGCCTCATCATCATAACCCAGGCAGGTAATAAAGACATTACTGGTGTCGCAGCACTGATGATGTGTTTGTTGTATCTGCAGATATACTTTTGCTCAAAAGTACACTGGCTCAGCTACACTGTCTTACTTACTTGTTCTGCTCTCAATAAGATGATGTGCCTtgacattctctctctctttctctccatgttTTGAAGTCAAGAGTACATTTTCTCATCGACCGCAAAAGTACTGTATGCATTTTGTAACGCCAAAatcatgggaaaaaaaagaaaagtacatCAGAACACCATTGTAATACCAtccaataaacaaacacaattcCA

Function

GO: NA

KEGG:

id description
K08826 HIPK; homeodomain interacting protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262418 lncRNA downstream 15074 28011063 ~ 28015612 (-) True tmem167b
TU262416 lncRNA downstream 15149 28010991 ~ 28015537 (-) False tmem167b
TU262415 lncRNA downstream 15149 28011063 ~ 28015537 (-) False tmem167b
TU262409 lncRNA downstream 294575 27735902 ~ 27736111 (-) True G193370
TU262408 lncRNA downstream 299024 27731003 ~ 27731662 (-) True G193369
TU262439 lncRNA upstream 18779 28067474 ~ 28067681 (-) True G193386
TU262468 lncRNA upstream 117146 28165841 ~ 28166081 (-) True G193411
TU262484 lncRNA upstream 186470 28235165 ~ 28236469 (-) True G193424
TU262486 lncRNA upstream 195113 28243808 ~ 28244702 (-) True G193426
TU262496 lncRNA upstream 268649 28317344 ~ 28318704 (-) True G193435
XM_007247727.2 mRNA downstream 2016 28024337 ~ 28028670 (-) True b3galt6
XM_022682743.1 mRNA downstream 15120 28011060 ~ 28015566 (-) False tmem167b
XM_007247729.3 mRNA downstream 22077 27962367 ~ 28008609 (-) True LOC103028137
XM_007247728.3 mRNA downstream 22079 27962367 ~ 28008607 (-) False LOC103028137
XM_022682742.1 mRNA downstream 87275 27911675 ~ 27943411 (-) False LOC103045240
XM_022682745.1 mRNA upstream 17187 28065882 ~ 28162362 (-) False LOC103044609
XM_022682744.1 mRNA upstream 17187 28065882 ~ 28162362 (-) False LOC103044609
XM_022682746.1 mRNA upstream 19681 28068376 ~ 28162362 (-) True LOC103044609
XM_022682747.1 mRNA upstream 142025 28190720 ~ 28201222 (-) True LOC111195421
XM_022682749.1 mRNA upstream 161437 28210132 ~ 28212738 (-) False LOC111195422
TU262199 other downstream 553817 27425042 ~ 27476869 (-) False LOC103046149
TU262021 other downstream 997597 27031663 ~ 27033089 (-) True G193097
TU261852 other downstream 2152033 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other downstream 2152033 25874910 ~ 25878653 (-) True LOC111195415
TU261664 other downstream 2813136 25211675 ~ 25217550 (-) True G192815
TU262456 other upstream 145684 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other upstream 161329 28210024 ~ 28212718 (-) False LOC111195422
TU262455 other upstream 161496 28210191 ~ 28213070 (-) True LOC111195422
TU262651 other upstream 527412 28576107 ~ 28583747 (-) False LOC111195343
TU262654 other upstream 527412 28576107 ~ 28583747 (-) False LOC111195343

Expression Profile