RNA id: XM_007247728.3



Basic Information


Item Value
RNA id XM_007247728.3
length 2000
RNA type mRNA
GC content 0.54
exon number 12
gene id LOC103028137
representative False

Chromosome Information


Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27962367 ~ 28008609 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CACGCGGCGGAAAACAGCACAGCAGCTCGAGCAACGAAACACAGCGCAGCGAAGCGAAAGGGAAGGGAGGGTGAGGAGCGGCGGAAAGCAGCGGAACCCCAGCCCAATCCAGCCCATCCCAGCCCAGCACGCGTCAGCACGGTCACGGGGACTGCTGCGGTCAGTGAACGCGGCGCTGCAAGAACAATCTCTCCAGCAGCGTGTAACGGGCTGCGGGGCGACTCGCTCGTGCGCGCGCGCGGGGGGCACTAACTAACTCACGCTTACGGCAGCTAATAACTTGTCTAAAAGCAGAACCGCGAGCAGAAGGAGTAAAGGGGCACCTGTGGCGGGCGAGGAGCTCACACCGCGTGCAGAGGAGCAGCCGCGGGCTCGGCGGAGGCTCGTGTCTCGCGGTCAGACGCGGAGCAGAAGTTGctagttttttgttgttttgtttttgtagctctgcagagaaagagagagcgcgtGCGGgaggaagagcggaggggggcTGCAGGAATGTCCCAGAAGGAGAGACCCACTTTCTATCGGCAGGAGCTCAATAAGACCATATGGGAGGTTCCGGAGAGGTACCAGAACCTCTCCCCGGTGGGCTCGGGGGCTTATGGGTCGGTGTGCTCGGCGTATGACATCCAATCAGGGCTGAAGATCGCTGTGAAGAAACTGTCCCGACCTTTCCAGTCCATCATCCACGCCAAGCGCACTTACCGAGAGCTCCGGCTGCTTAAACACATGAAGCACGAGAATGTGATTGGCCTGCTggatgttttcacacctgccacCAACCTGGAGGAATTTAATGACGTGTACCTGGTGACTCACCTGATGGGCGCTGACCTCAACAACATCGTCAAATGCCAGAAGCTGACGGACGACCATGTGCAGTTCCTCATCTATCAGATTTTACGGGGCCTGAAGTACATCCACTCAGCGGACATCATCCACAGAGACCTAAAGCCTAGCAACCTGGCAGTAAATGAAGACTGTGAACTGAAGATTCTGGACTTTGGGCTGGCGAGGCACACAGACGACGAGATGACGGGCTACGTCGCAACGCGGTGGTACCGTGCCCCAGAGATCATGCTGAACTGGATGCACTACAACATGACGGtggatATCTGGTCCGTCGGCTGCATTATGGCAGAGCTTCTCACTGGACGGACACTCTTCCCTGGCACTGACCATATAAACCAGCTTCAGCAGATAATGCGCCTGACTGGAACTCCCCCAGCCTCACTAATAAGCAGGATGCCCAGCCACGAGGCCAGAAACTACATCAATTCCTTGCCACATATGCCAAAGAGGAACTTTGCTGATGTGTTCATTGGTGCAAACCCATTAGCTGTAGACCTCCTAGAGAAGATGCTGGTTCTGGACACAGATAAGCGGATCACAGCCTCGGAAGCCCTGGCCCACCCGTACTTTGCGCAGTACCATGATCCTGATGATGAACCAGAGGCCGATCCATATGACCAGAGCTTTGAGAGCCGGGAGCTGGATATCGAAGAGTGGAAAAGGCTGACCTATGAGGAGGTGCTTAGCTTTGAGCCACCGGTGTTTGATGGAGATGAGATGGAGTCCTGAGGAGCTGCTGCTCATCCCTTCCTGTTGTAGAACGACTGCAGGGTTCATCACCTCACGGACCCGCTCGTCTACGCGGGATAAACGCACGCAATGTGACGTTAAAGGAACAGATTGCCCAAAAAATGCCTTGTTCGCTAAATCCTGATTGAAAGATAACAGCCGCTGGTTAGCAATgcatagcattagctagctagcattcaTTGATTGTTAATCTTgctgtgtatttttttggtCAGACTGTTCCTTTAAAGTGCCTGTGCCATCTTTCAGTACTGGCTTCCTGAAGTTCAGAGACTTATATCTCCCCTCACACATGTGCTGTGCTATTTGTGaatggaggaaaaagaaaacatatttacacacacagacgtGCATACACACGTGCGTACATGGACTGGCCACTTCATTTAAAC

Function


GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU262409 lncRNA downstream 226256 27735902 ~ 27736111 (-) True G193370
TU262408 lncRNA downstream 230705 27731003 ~ 27731662 (-) True G193369
TU262406 lncRNA downstream 238262 27723860 ~ 27724105 (-) True G193367
TU262202 lncRNA downstream 455838 27488865 ~ 27506529 (-) True G193223
TU262416 lncRNA upstream 2384 28010991 ~ 28015537 (-) False tmem167b
TU262415 lncRNA upstream 2456 28011063 ~ 28015537 (-) False tmem167b
TU262418 lncRNA upstream 2456 28011063 ~ 28015612 (-) True tmem167b
TU262439 lncRNA upstream 58867 28067474 ~ 28067681 (-) True G193386
TU262468 lncRNA upstream 157234 28165841 ~ 28166081 (-) True G193411
XM_022682740.1 mRNA downstream 7315 27911675 ~ 27955052 (-) False LOC103045240
XM_022682741.1 mRNA downstream 7924 27911675 ~ 27954443 (-) False LOC103045240
XM_022682739.1 mRNA downstream 12063 27911675 ~ 27950304 (-) True LOC103045240
XM_022682742.1 mRNA downstream 18956 27911675 ~ 27943411 (-) False LOC103045240
XM_022682738.1 mRNA downstream 18960 27911675 ~ 27943407 (-) False LOC103045240
XM_022682743.1 mRNA upstream 2453 28011060 ~ 28015566 (-) False tmem167b
XM_007247727.2 mRNA upstream 15730 28024337 ~ 28028670 (-) True b3galt6
XM_007247722.3 mRNA upstream 22079 28030686 ~ 28048695 (-) True LOC103026702
XM_022682745.1 mRNA upstream 57275 28065882 ~ 28162362 (-) False LOC103044609
XM_022682744.1 mRNA upstream 57275 28065882 ~ 28162362 (-) False LOC103044609
TU262199 other downstream 485498 27425042 ~ 27476869 (-) False LOC103046149
TU262021 other downstream 929278 27031663 ~ 27033089 (-) True G193097
TU261852 other downstream 2083714 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other downstream 2083714 25874910 ~ 25878653 (-) True LOC111195415
TU261664 other downstream 2744817 25211675 ~ 25217550 (-) True G192815
TU262456 other upstream 185772 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other upstream 201417 28210024 ~ 28212718 (-) False LOC111195422
TU262455 other upstream 201584 28210191 ~ 28213070 (-) True LOC111195422
TU262651 other upstream 567500 28576107 ~ 28583747 (-) False LOC111195343
TU262654 other upstream 567500 28576107 ~ 28583747 (-) False LOC111195343

Expression Profile


XM_007247728.3 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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XM_007247728.3 Expression in each Bioproject

Bar chart with 7 bars.
XM_007247728.3 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 700.
End of interactive chart.