RNA id: XM_007247741.3


Basic Information

Item Value
RNA id XM_007247741.3
length 2298
RNA type mRNA
GC content 0.42
exon number 3
gene id prelp
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27162747 ~ 27170995 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaaatagacacACACAGCATTGTTGACCTTCAACAGAGTGAACAGAGTAAAAGGCAGAGAAGTAAAGACCCAATAGCCAGGCTGCCTCACGGAGGAGAGCAAAGACAGCAAAAGggggtgagagagggagagagagagagagagagaggagagaaagaagggagggacagagagagagggagagagaaggaggacaGAAACCCCAAAGTGTGAAGGAGACGACTTGAAAAGGCATAAAAGAAGAGGGCAAGTACCAGCAGCAGGACCATGAAGGCTGGGCTTGGATATTGCTCTCTGCTAGTCCTTCTCCTGACCACAGATGTCTTGGGACAGCGTGCAAGGCCACGTCCAAAACCCCCAACCACAAGGAAACCTTCTCCACCTGTACCAAAGAGACCTTCTCCTTCAACTCCCAAAAAGGAACTCGAACCTCAGGAGCCCACTGATTTTCCCCCTCCCATCCTTGGTCCACCTTCCTCCTTCGCAGACTGTCCTAGAGAGTGCTTCTGTCCACCTTCCTACCCAAATGCTCTTTACTGCGAGAACCGCAACCTCCGCAAGGTCCCAATCATCCCCTTTCGCACCCATTATCTCTACCTACAGAACAATTACATCGATTCAGTGAGTGCAGACTCCTTCAACAATGCCACAGACTTGAAGTGGATAAATTTGGGGAACAACCGCGTTCGCTCCATAGACAAACAAGTGTTTGAGAAGCTGCCAAATTTGCTGTATCTCTACATGGAAAGAAACCAGTTAAAGGAAGTGCCCAGCGCTCTGCCAACTTCCCTGGAGCAGTTGCGACTTAGCCGCAACCAAATATCAAAGGTCGCTCCGGGAGCTTTCAGCAAGATGGAACACCTCGTACTCCTGGATCTGCACCACAACAAGATCAGCGACAGCAACCTGGGCAAGAACGTCTTCAAAGATCTTAAGAATCTAATACAGCTCAACCTGGCACACAACATCCTCAGGAAGATGCCCCCAAATATACCCAACAGCATCTTCCAGTTGTTTTTGGACAGAAACAACATTGAGGACATTCCTGAGAACTATTTCAAAGACTTTTCGAATCTAGCTTTTGTTAGACTCAATTACAACCAGCTGAGCGACAAAGGCCTCCCGAAGATGGTGTTTAATGTCAGCACACTGCTTGATTTGCACTTGGCTCACAACCAGTTGAGCACTGTTCCACTGTTCAACGGCCACCTGGAGCATCTACAcctcaacaacaacaatattGAGAGTCTAAATGGTACGGAGATCTGTCCCTTTAAGCCAAACGGGGATGTGCATGACAATGACAGCGTGCCCAGGCTCAGGTATTTGCGGCTGGATGGCAACCACTTGAGTCCCCCTGTCCCCATGGATGTCATCATGTGCTTTAGACATCTCCACTCCATCGTGATCTAGAAGGAATGTCTGGATCCTTTTTGAAATTGAAGTTCTTGAACACGTTCATGcatgtatatacatatgtgCACAGCAGCGGCGGCCCTGTCCACTTGACAGTACTGACTGACTCAAGCAGTACTATGGAAAACACAAGAAATGGctaaatcttttcttttttttttcgtcagGAATGTATTTTTGAGCTTCATgagcttaaaaaatatttattaaatattaaaaataggaGTAACACTTTTGAGCATGAATATTTCTGCATTTAAGATatgtttatgtattatatatacagttctcGTGATGCAACAGTATTATTAAAACGATGAGGTAAAATATCCTTGAAATCAAGGTACATTAACAGACATTCTGTACGACattacagtggtgcttgaaagtttgtaaaCTACAGAATATAGAATTTTTGATAGatccctgttctttaaataaaacaggctctGTCTATTCATGTCTGATTGTCCTCCCattgattgaaaacacctgACTCTAATTTCAACTTTAAACTAACTGCTAATcctagaggttcacatacttaAGCCATTTACAAGTATGTACTGATGGATCAACTGggtcaataaataaattaccaagtataatatttttgtctgttttgtttaacttgcttctctttatctacttttaggacttgaaATATGTGAAAGATCTGATGaagttttaggtcatatttatgcagaaatatagaaaattctgaagggttcacaaactttcaagcaccactgtatatCTACAATGTGGTTACAAACAAACTGTAGAACACtaaacattaaactaaaatgactggaattattcagtattctgaTCACCTGCTCCCAAACTTAGTTTACTATAAGTCATGTCTGATAAtaattt

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K08125 PRELP; prolargin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262036 lncRNA downstream 23511 27138083 ~ 27139236 (-) True G193110
TU262008 lncRNA downstream 163674 26927108 ~ 26999073 (-) True G193085
TU261968 lncRNA downstream 262933 26885836 ~ 26899814 (-) True G193056
TU261975 lncRNA downstream 263343 26898271 ~ 26899404 (-) True G193062
TU261955 lncRNA downstream 286127 26876370 ~ 26876620 (-) True G193049
TU262095 lncRNA upstream 59104 27230099 ~ 27230302 (-) True G193156
TU262099 lncRNA upstream 68431 27239426 ~ 27239902 (-) True G193160
TU262105 lncRNA upstream 93472 27264467 ~ 27299949 (-) True G193165
TU262093 lncRNA upstream 124733 27295728 ~ 27305659 (-) True G193154
TU262127 lncRNA upstream 153411 27324406 ~ 27324839 (-) True G193178
XM_007247790.3 mRNA downstream 9421 27147714 ~ 27153326 (-) True LOC103047370
XM_007247743.3 mRNA downstream 28891 27129152 ~ 27133856 (-) True il10
XM_007247751.3 mRNA downstream 438641 26718077 ~ 26724106 (-) True fam72a
XM_022682717.1 mRNA downstream 813042 26114437 ~ 26349705 (-) True LOC103035733
XM_007247753.3 mRNA downstream 1077269 26008796 ~ 26085478 (-) True LOC103036054
XM_022682725.1 mRNA upstream 26056 27197051 ~ 27210316 (-) False LOC103032351
XM_007247742.3 mRNA upstream 26056 27197051 ~ 27210315 (-) True LOC103032351
XM_022682726.1 mRNA upstream 103662 27274657 ~ 27290319 (-) True LOC103031188
XM_022682727.1 mRNA upstream 103662 27274657 ~ 27283949 (-) False LOC103031188
XM_007247738.3 mRNA upstream 103662 27274657 ~ 27280054 (-) False LOC103031188
TU262021 other downstream 129658 27031663 ~ 27033089 (-) True G193097
TU261852 other downstream 1284094 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other downstream 1284094 25874910 ~ 25878653 (-) True LOC111195415
TU261664 other downstream 1945197 25211675 ~ 25217550 (-) True G192815
TU260862 other downstream 4103942 23054633 ~ 23058805 (-) True G192251
TU262199 other upstream 254047 27425042 ~ 27476869 (-) False LOC103046149
TU262456 other upstream 1023384 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other upstream 1039029 28210024 ~ 28212718 (-) False LOC111195422
TU262455 other upstream 1039196 28210191 ~ 28213070 (-) True LOC111195422
TU262651 other upstream 1405112 28576107 ~ 28583747 (-) False LOC111195343

Expression Profile