RNA id: XM_007247766.3


Basic Information

Item Value
RNA id XM_007247766.3
length 5145
RNA type mRNA
GC content 0.45
exon number 3
gene id lrrn2
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 25235114 ~ 25354477 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTGTCTATGCCGCTCAAGCTGGCTAGGCGCTGACAGTAACAGTTGCTTGCGCGAGAGTGAGCGAGggagagaaggacagagagagaggagagagagagaaaatggtacagcgagtgagtgactgagtgagcgggcgagtgagaggagagagagagggagagcgtgAGAGTgagcagaggagagagagagagagaaaaagagagagagcgagagcagtACAGATCCATCCTTCGTAGCACGCCTACACAGTGTCAGTAATAAAGATACACTGCTTCAGGTCGGAGGGCTGAAGACAAGTCCGTGAACGGAATCCTGGGAGACGTTCGGAACGCCGAGTGGGAACGCCGCGAAGGAGACAGGTTGATTGAATAAAGgttggaaaagaaaagaagatctGGAGAGCGTCAGAGGAAAGAGAGCAGAAGGCGAAGAAGAGGCGAAGAGGAGACGTCTGCAAAGTGTCTGCGATGCACGTAGACGTTCCCTGGCATGCAACGgctgcactgtaaactcagtgaaggcagtctgagacacacgTTTGGTCTGGGAGCAGAGGACAGGTCTGACATATGAAGAGGTATCCCTCAGAAGTGCACCTGAAGCTCATTTGTTGAACCACAATGTAAAGTCAAAATCAATGGATTGAGTAAAGGAACAAGAGCAACGAACATTGCCGAGTGACAAACATCGCAAAGCGACAAACATCGCAGTGTTCCAAACTCCATATTGAAGGACATCAAAGCAGGAAAGTTTTTTACAGTTCCTGCCAAGTCCTCAAGGGTGGGAAAAGATGAAACGAAAAACTTAATTTTGGGGACAGCTTACTTGCAAGACCCAAGTCTTCTATCACATGGACAGATAAGTGAGAGACTGATTtgaagaccaaaaaaaaagaaaaaaacaggccaGGCGGTCCTGTACATCCTGTTCTCCAAGATAGCGTAACTAATTAACTCCAGTGATGAAAATGAGAGTGATTACGAAGATTTTTGTGCAAATTCATCTCTTGGTTGGAGTCGCTAGCTCTCTGGTAATTCACTCCATGCCCTGGAGGGTACCATGCCCTCACCAGTGTGTGTGCCAGATCAAGCCCTGGTACTCTCCCCAATCTGTGTACAGAGAGGCTCCTACTGTTGACTGCAATGATCTACTCCTCACCCAGCTGCCCACGTCGCTCCCTCCAGAGACGCAAACACTCCGGCTTCAGAGCAATCTCATCAGTTCCGTGGATCAGGGCGAACTCCAAGGTCTCGCCAATCTTACTGAGTTGGATCTCTCCCACAACAGTTTCATCAGTACTCGTAACCTGAGAATCACCGACCTGCCAGCTCTTCTCAGCCTACACATGGAGGAGAACCAGCTCAGGCACCTGCCCGAAGAAGCCTTCTTTGGGCTGCCTAGCCTTCAAGAGCTCTATCTCAATCACAACAGGCTTCGAAGCATTTCTCCTGCGGCTTTCAAGGGTTTAGACAATCTTCTGAGGCTTCATCTCAACTCTAACCATCTTGTGGTAATTGATCGGCGGTGGTTCCATGCTTTGCCTCAGCTGGAAGTTCTCATGATTGGCGGAAATCCAGTGGACGTTATCCAAGATCTCAACTTTAAACCTCTTGGATCTTTGCGCAGCTTAGTCCTGGCAGGCATGGGCTTGCGCGAGATCTCAGAGCGTGCTCTAGAGGGGCTTCTAAACTTGGAAAGCATCAGCTTCTACGACAACCATCTGACCAAAGTCCCAAAAGAAGCACTGGAGAAATTGCCAGTCCTGAAATTTTTGGACTTGAACAAGAACCCAATTCAGCTGGTGCAAAGAGGGGATTTTAGGGACATGCTTCACCTGAAGGAGCTCGGCTTGAACAACATGGAGGAGTTGGTTTCCATCGAGCACTCGGCCATGGAAAACCTGCCCGAGCTTACCAAGCTGGAAATTACGAACAATCCGCGACTGTCCTACATTCACCCTCAGGCTTTCCAGAAGCTGCCAAGTATGGAGAGTCTGATGCTTAACAGTAATGCCTTGAGTGCCCTACACCGTCAGACTGTGCGCTCTCTGCCAAGCTTGCAAGAGATCAGTCTCCACACCAATCCCATTCGATGCGATTGCCTTATTCGCTGGGTGGGTGCAGAGGATGACAAACCTGTTCGATTCATTGAACCTCAGTCCACATTCTGCTCAGAACCTCCTGAGTTAAAAGCTAGAAGGGTAAAAGAAGTTTCCTTCAGGGAAATGGCGGAGAGCTGCCTGCCTTTGATAGCCCCAAGCACATTTCCCTCTTACATCCAAGTCAAACATGGAGACAACCTTGCCCTGCATTGCCGAGCACTGGCAGAACCAGAGCCAAATATTTACTGGGTCATTCCCAAAGGTTTGAGGTTAACTCCTGCAACCAGATTCGGACGTTACCAGGTCTTAACCGAGGGTACTCTTGAGATCTTTGGAGTCACTGCTGAGGAAGCTGGTTTCTACACTTGTGTGGCACAGAATTTGGTCGGGGCTGACACAAGGAGCTTGACCCTAAAGGTGGAAGGATCAGGCAGGGCTCATTTGTCAAGTGCTCAAACAAGTGCTCAAAGTAGTGACGACAACCTCGAGGTACGAGACATCAAAGAACACTTTGCTCTACTGACCTGGCAGGTCAGCCATAATGTTCCATCTGCTCGACTCTCTTGGATTGCCAACGGAAGCTTGGAAGATCACCACAGGCATAGTACCCGAATACTGGCCGGCACTAGAGGCTTCAACCTGACTCGTCTCCAACCAGGAACCCACTACAAGGTCTGTCTGCACATGGGGCCAAATGACACCTCCTGTGTCCATCTCAGGACTAAAGAGGTGATCGTGCCAGTCCCTTCTCCAGACTTGACCCCTGCGGTTCTACTGGCTATGTCAGCTCTTCTCCTCCTGCTGGCAGCCAGAGCTTGTCAAGGGGGTGCCATGCTCAACTGGAAAGAACAGACACCAGAGTTTGGGAAGCCTCATACCACCATTTTAACCCAGGAGGCAAAGGCTTTCATGGCTCCAGTATTGCCTCTGAAAGAACCAATTCAGCAGTACAGAGATAAACTTTCATCAGAGGGAAGCGAAAGGAAGACCAGCGATGCTCAGCAGGGGCATCACGCTCTGGGGCCGACAAAGGAGGCATGTTGAGTTCGACAGCGCTAAGAGGATGTGCCACTGAAACCATACACAAGCTTTGAAAAGCTACAGATAGTACAGCTTCTCTCGGACAGTTCAAAAATCTGAAATTCTCCTGAAAGTCTcctgaaactaaaaaaaatcaagaactgaACTTTTCTTGCCAGATCTGCATAACAAAGAGAGTGACCCAATTATTAATTAAGTACAGTGATGTAATAAAAagagatttcattttttatttattttacaacagAGAAAAGATAcagtacatatatgtatattgaaAGCATTTGTTCATGTACTCGCGTGCAGAAACACTCAGAGGAAGCTGATGCGGGTGCGAGCTTCAGGAGAGTTCTCGATTATTAATTCTGTTTGTAAGCAACTTCGGAACTTTACGAGTCTGTTATCACAACAGACCTGAGGGTTGCAACGTGATACGGAGTACTCATATATTTTTCATACTGCTGAAGAGACTAATTTGACAGATGGGTAGAGGAATCGAGTGAAGGACATTCCAAGGCTCCCAACTTTACGCCAAAGGGGACGGAAACTGTTGTTGGGAGCTGCCGAGAAGTTTCATgccacttttctattttttaaaatgtgatacAGAtactatttgaaaaaaaaaaaacgaaaactaTGAGATGATGTCTAAGCGCTGAAAAAAAGGCACTGAAAAGACTCTTCAATACAGAAgatgaaaagaagaaagaagggtATTTTTAATACGCTGCATAATCATAATATACTCATTATCTTTCTTTTGTAATGTCGGCTAAATTGAGCTTGAGCACAGTTGAGAAGCCCCAGCTTAGTCAAGTGATATTCAGTATGCTGAATCTCTGAAACATGAAATACGGAGGAAGGAGCTCTTCTGAAATACGGACACGGATATGGATTGATCTTTGCTTTGTCTGAGAGAAGCCAAATGTTACTATGGGCTAAAACAAAAGACTGAACAGAAACGGAAAGGACTTAGAGCCCTGACcgctatgtatgtgtgtgtaccagCATCTTTGTCCTGCATAAAAGACGGAAGacggaaaaggaaaaaaactacGGAAATGAATAATTGAATGATTGCAAAAGTACGTACATACATACAGGGAGATTCATGATTCAGGGAGGATTCAGGCCAAAATGTTGTGAACGGTGAATGAATGAAAACATCCACTTACACCTTTTACCATCTTTTgtgacaaagaaaagaaaagaacctCCCGTTATCTCTCGAaagcaatggaaaaaaaacggACATTAGGCGCTTCACTGTGCTAATGGGTTTGTACTTAACAGAAAGATAGTGCCAAGTCCTTGCACTACTCAACTTTTTGTGCAAGAAGAGATTTGGATGAGGATTGAATACGGAATGATCTCAGTTCCTCCGTAATACTTGTCAGGTTGAGGTGACTTACGAACTTGAAATTGAGTAAATTGAGcgtattaaacatattaaacgtAATGAATGCTCAATCAGCTGTGAGGGACCACGCATCAGTGAGTGATacgtatacatatataaatatatatatacactgcagaAAGGTTAACGAGGCCAAAAACTGTCCTTTGTTTGAACAAAGGAACCAAACAAGGGAATTGTCAGCAGCATTTTACGGAATATCAATTATCAACGGATTCTCATGTGTACGGGGAACTTTCCGTTTTTCTACAGTACGTCATTTCCTGTCATTATGGTAATCCtgctttgttttagtttgcgTCAGTTTGTGGTTGATGTGCCCCCCTTGTTTCCGCAATCCTCGCTCTAACTAAACGCCCCCTCTTTTTTCATTTCCgtaatttctgttttttccgttttcctatttttgcatttgttgGCTACTGTTTCTTTTCTATCACCTCAGAAGCTGTACATACAGTAAATCAAACCCCAGTTTCCTATTCAGTGTTCCACTTAATTCCCTTTCAGAAATAATTTAGATGACTGTGTGTTAAATTCTATTTTGAGGTATTATTAAACCATTTTGGACTGATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261647 lncRNA downstream 43054 25190093 ~ 25192060 (-) True G192806
TU261586 lncRNA downstream 271324 24962509 ~ 24963790 (-) True G192763
TU261581 lncRNA downstream 325085 24909809 ~ 24910029 (-) True G192758
TU261580 lncRNA downstream 329769 24905140 ~ 24905345 (-) True G192757
TU261576 lncRNA downstream 374714 24844555 ~ 24860400 (-) True G192754
TU261672 lncRNA upstream 8054 25362531 ~ 25362736 (-) True G192822
TU261726 lncRNA upstream 96791 25451268 ~ 25451654 (-) True G192869
TU261728 lncRNA upstream 103936 25458413 ~ 25458628 (-) True G192871
TU261751 lncRNA upstream 148026 25502503 ~ 25503530 (-) True G192887
XR_002651634.1 lncRNA upstream 185545 25540022 ~ 25542358 (-) True LOC111195414
XM_022682690.1 mRNA downstream 434213 24774039 ~ 24800901 (-) True LOC103045744
XM_022682685.1 mRNA downstream 951415 24147827 ~ 24283699 (-) True nfasc
XM_022682684.1 mRNA downstream 1129216 24039246 ~ 24105898 (-) True cntn2
XM_007228563.3 mRNA downstream 1208069 24015546 ~ 24027045 (-) True LOC103040944
XM_007228562.3 mRNA downstream 1233166 23994623 ~ 24001948 (-) True LOC103040645
XM_022682699.1 mRNA upstream 154011 25508488 ~ 25554659 (-) False LOC103039085
XM_022682697.1 mRNA upstream 165704 25520181 ~ 25554687 (-) False LOC103039085
XM_022682698.1 mRNA upstream 165704 25520181 ~ 25554687 (-) True LOC103039085
XM_022682701.1 mRNA upstream 173165 25527642 ~ 25532853 (-) True LOC103038137
XM_022682700.1 mRNA upstream 176432 25530909 ~ 25537003 (-) False LOC103038137
TU261664 other downstream 17564 25211675 ~ 25217550 (-) True G192815
TU260862 other downstream 2176309 23054633 ~ 23058805 (-) True G192251
TU260753 other downstream 2446159 22786334 ~ 22788955 (-) False LOC103041653
XR_002651631.1 other downstream 2512209 22711022 ~ 22722905 (-) False amhr2
XR_002651628.1 other downstream 2872657 22349347 ~ 22362457 (-) True alas1
TU261852 other upstream 520433 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other upstream 520433 25874910 ~ 25878653 (-) True LOC111195415
TU262021 other upstream 1677186 27031663 ~ 27033089 (-) True G193097
TU262199 other upstream 2070565 27425042 ~ 27476869 (-) False LOC103046149
TU262456 other upstream 2839902 28194379 ~ 28212718 (-) False LOC111195422

Expression Profile