RNA id: XM_007248309.2


Basic Information

Item Value
RNA id XM_007248309.2
length 1639
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC103038772
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14754376 ~ 14764355 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaacaaaatcataattttttaagtggtctcattttttttctagagctttaTATTAAGTTGGTCATAATAGTGGACCAGCATGGTCAAGAGAAAGGTCATTAAGCTTAGGCATAATGCTTGGCTGTTTTGGGAAAGCTAGCTGATCAATTTGATCAAACTAGTTCTAATGGTGGACCAGCTTTGGCAGGTTTCATCATACTGGATGAGTTATGTCAAATCTGGTTGTCCAACTGGGTCAGGCTGGTCTTTACTGGTGGAGCAGAATAACTGTTAGGTATGTAAACCATCTTGGGTTCAATAGGTAATCTTGGTTACCAAGCTCAGCTATGCTGGATGGCTTACTTCATGTTGGTCAACATAATTGGTCATACTGattctacttttttatttggCCAAGTTCTACAGGTGGACCAGTATGGCCCAGTGTGAGCTTGTGGTCCTGATCAAACTGGTTGACGCAATCAGTAATGGTGATCCTACTGCTTGACTAAGTTCTTGGGCATGCTGGTAGACCAGAAAACcactcagacagacagatatttaGTGGTACCAGTTTGAACAGCTTGAGCAGTCAAGAAGAACGCGGTAATGTTACAGTATTGACACTTTGTTCCTTGTTTACTGGACTCTTCCTCCTGCAGGCTGATCTCGCTGGATGACTCTGGTTGGGAGGAGCAGTACAGAGCTGTTAAGGGTGAACAGTTTGAGTTAGGTGTAACAGTGAACAGCAGTGTAGAGGACAGTGAATCAGTGGTATAGGATGGAGGAAGCGTACACGGCCCTTTATCAGCAGTTTCTCCGCCTTCAGTCTCTCTGCCTGAAACAAGCCGCCATGCTTCAACACCTGACGGAGGCGTTGAGACGACAGCAAGGAAATCTGGAACCCCCCGGCACCAAAGAATTCTTCCTACCCCATCAAGGGTATAAAAGCTGCGTGACCCGCGTGCTGCCACACCCTAAGGAAACCAGTCTACCTCCTCTTTCTTATGGGGATTTTGAAGATTTGGTATCTATCCCGATCCAGTGCACAGAGGAAGAGGCGACCTTCACCTATCCAGGTGTTCCTGCACAAGCAGCTCAGATGCCAGCCCTCGCACCACACCCAGGTGATGCTAACCTCGCTCCCCTGACTGGGGCACTGCACCGACTACAGCTTGACCCCACGTGGGCGGAGCCAAAGCTGAACAACTGTGATCAAACAATGCCAGCGGCTTCTCCGGCACCTCAAGCCAGCATAGTGAAAAATTTACAGCAGGTTGAGCAGCGCTGGCACAGCCTCCAAACATCTAAACCCACGCGGAGGCCGTGGTCCTCCTCCTTCATGAACAGTGAGATGCTGAGCCAGGCCGGGGGGCTGCTGATGTCGGGGGTCATGGTGTCGTCCCAGGTGTGTGAATTCTGCCATGCTGTGTTTCCCGGACACACCACCACCAACGGGGAGTTTCTGCGCCATCTTATGTCACACACCTGAGACACCACACCTGAGACACCACACCAGATACATCCCTATAGAGACATAACACTGGagacaaacacctgaaacaTCACCCCAGAGATATCACATATGGAAAAATCACCAGAGACATCATACGGGAGACATCTGTTACCTGTTCTTAAATACAGAATGAGACACATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257344 lncRNA downstream 40643 14712883 ~ 14713733 (-) True G189821
TU257334 lncRNA downstream 44850 14707735 ~ 14709526 (-) True G189814
TU257328 lncRNA downstream 157802 14594996 ~ 14596574 (-) True G189808
TU257323 lncRNA downstream 207731 14545906 ~ 14546645 (-) True G189803
TU257307 lncRNA downstream 330706 14420713 ~ 14423670 (-) True G189789
TU257360 lncRNA upstream 18606 14780548 ~ 14782900 (-) True G189835
TU257362 lncRNA upstream 35651 14797593 ~ 14805872 (-) True G189837
TU257367 lncRNA upstream 51056 14812998 ~ 14815031 (-) True G189841
TU257371 lncRNA upstream 63893 14825835 ~ 14830306 (-) True G189845
TU257372 lncRNA upstream 80634 14842576 ~ 14844243 (-) True G189846
XM_007248308.3 mRNA downstream 26062 14720385 ~ 14728314 (-) True dnajc14
XM_022682431.1 mRNA downstream 60261 14679927 ~ 14694115 (-) True mcrs1
XM_022682427.1 mRNA downstream 76898 14668007 ~ 14677478 (-) True suox
XM_022682435.1 mRNA downstream 94429 14656245 ~ 14659947 (-) True LOC103046666
XM_022682436.1 mRNA downstream 100042 14647806 ~ 14654334 (-) True LOC111195382
XM_007248310.3 mRNA upstream 5371 14767313 ~ 14778341 (-) True LOC103039087
XM_007248313.3 mRNA upstream 24380 14786322 ~ 14795751 (-) True LOC103039903
XM_007248315.3 mRNA upstream 85180 14847122 ~ 14856386 (-) True LOC103040538
XM_022682438.1 mRNA upstream 192195 14954137 ~ 14955419 (-) True LOC111195383
XM_007248429.2 mRNA upstream 211636 14973578 ~ 14984895 (-) True LOC103047892
XR_002651608.1 other downstream 1677860 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 2134810 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 2408994 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 2710083 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 3762982 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 556702 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 669725 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 1640849 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 2071908 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 2426723 17188665 ~ 17193747 (-) False irf6

Expression Profile