RNA id: XM_007248310.3


Basic Information

Item Value
RNA id XM_007248310.3
length 2252
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC103039087
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14767313 ~ 14778341 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATATCTGTAGTGTCATGGAGGGATGTTAACATCTGTGATCTGACAGCATGTTTCGGCTCTGCATGAAGGCGGTTTTTGTGCATGAACAGCTGGCTGTAAAGAACTGCTATAAATTAAGGTTGTATATCCCTGGCTGTAGCTGTTTCTCCACCTCTCAGGCTAGACTAGGGGTCCTTAGGAGAGTGAACGACAAGTATGAGCGCTTCCTGGAGCAGCGTTTCCCTCGCTTTTATGTCTTATACCACACCCTCATGAAAGGATTTAAGCTCCTGTTTGAAGATGTGAAAGAGGTCAGAAGAATAAAGAGCAGCATGCGCAGTAACAGTATCCACTACAGAGAGCTCCCATATCGAGACATGGAGAGATTACTGCTGTTTCGACGGGACATGATTAAAGCCATTCCACTGATTGTGATCTCACTTCCTCCATTCGCCATTGGTGTGGTCTTCACCCTGATGTGCCTCTTTCCACGGCAGCTGCTCTTCCGACACTTCTGGACTCCACAGCAGCAGAGGAAGTATCAGATGATTGCTCACGTAAAGCGCTCCAAACACCAGGCAGAGGTTCTGAACAATATCTTGTTGACTATCCCGCGGATGAGCGAGTGGCCCAGACGGACTCTGCTCTTAAACCTGTGTAGCAAGGTCCAAAGTGGAGTCCACCCAAGTGTTTCAGAAATCTGTGCTGTACGTGAGGCCTTTTCCGGACCTCCACTGGAACTGCAGACTCTGAAAGCGAGTCATTTGAGATCTTTGGGCTCTCAGATCCCTGTAATTGTGTGGTTGCCCAGTTTCCTGGTGCGGAGGCGGCTCACTACCAAAGCCCTGGATCTGCTTTATCTGGACCGAGCTCTGGGCACTCTAGGGCTTGATCAGCTCAGCGATGAAGAAATGAAACGCGCCTGTGATCTTCGTGGGCTGAGTCCCAGCCGCCTTACTTCCAGCCAGTGTAGAGAGTGGCTTCAGCAGTGGCTCCAGTTCTCAGCACAACTCAAAGaTTCAGAATCCTCACTTCTGCTGCACAGCATGACGATATTAACCCTCGTCTATCCCCCAAAGTGAGAGAAGAATGGTGCTGCATGGAAATATTTCATCTTCCTCCTGTTTacagactgaaaacttacttcaGTGTACAGAGTTTACACCACAGACAAAGCCTTCACAGATTCGGCACTGTGCATAGGTTTTAGGCCCATATTTACACTACTCTGggtataattttctttttctgcaggcactcatatttttgtcatttatatcTGTCGATTTTCCATCCCTTAATTCTCTTATTAATTCCCATTTATGACGTACCCATCAGCCAGAATTGGAGCATCGGGAAACGGCTCTGGTACACACACCTGGTACACCATGTCAACTATATAGCAACACCCCAGCAACCCACTCCTTTTCATTGGAACTACCAAATTATGCTTTacaaacatcttagcaacctcatagaaacaccatagcaaacacctggCAGCACCAGTGGAACAAAATCAATACATTAGCAGcatcctagcaaccaccttagataccacagcaactgttcaacaaccaccaagcaacaccttaggaacAAACTCTTTACATTAGTAACTAACCACTTAGCATCACCTTAGGAACCCCAAAATAACAACCACATTAACAACACTAATCAGTACATTAGTATcctcctagcaaccaccttagataccacagcaaccgtTCAGCAACCAAGCAACAACTTAGGAACTACTTAATATTCATCCtgaatatcatagcaaccagctagcgaACTCCACTGGAACCTAGCagcacctgagcaaccacctagcttAACCCTAAACAACATCATATCATTATATCATCTTAAtcaacatagcaaccacattgGATCACAAATACAATCAGCAAATGCGCCTttcttattataattaattctgAAGAAAGTAGTTAAGATCTTGTGAGCTTGGAAAATTGCCCTAACAAAAATGGTCTAACGTCATAATTGGTCTAACGTCATAATAAGGCAATGaatgaaaaacactgttttagtaaGGAAATGATAACAAAATATCTCtgaatgtctttaaatatacaACTATACAatcatacatttaattaaaatgtattacaaatgtaaaaaaggttaaagtacaaataaccaaaaaagtgGTAACGTGCCAAAGAGcctacaatgtttttttttttgtttgtttgttttttctaattttagattcatttacacgaccaattactcaacccactca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257357 lncRNA downstream 6939 14759788 ~ 14760374 (-) True G189834
TU257344 lncRNA downstream 53580 14712883 ~ 14713733 (-) True G189821
TU257334 lncRNA downstream 57787 14707735 ~ 14709526 (-) True G189814
TU257328 lncRNA downstream 170739 14594996 ~ 14596574 (-) True G189808
TU257323 lncRNA downstream 220668 14545906 ~ 14546645 (-) True G189803
TU257360 lncRNA upstream 2207 14780548 ~ 14782900 (-) True G189835
TU257362 lncRNA upstream 19252 14797593 ~ 14805872 (-) True G189837
TU257367 lncRNA upstream 34657 14812998 ~ 14815031 (-) True G189841
TU257371 lncRNA upstream 47494 14825835 ~ 14830306 (-) True G189845
TU257372 lncRNA upstream 64235 14842576 ~ 14844243 (-) True G189846
XM_022682440.1 mRNA downstream 2958 14754376 ~ 14764355 (-) False LOC103038772
XM_022682439.1 mRNA downstream 3659 14754376 ~ 14763654 (-) False LOC103038772
XM_007248309.2 mRNA downstream 5371 14754376 ~ 14761942 (-) True LOC103038772
XM_007248308.3 mRNA downstream 38999 14720385 ~ 14728314 (-) True dnajc14
XM_022682431.1 mRNA downstream 73198 14679927 ~ 14694115 (-) True mcrs1
XM_007248313.3 mRNA upstream 7981 14786322 ~ 14795751 (-) True LOC103039903
XM_007248315.3 mRNA upstream 68781 14847122 ~ 14856386 (-) True LOC103040538
XM_022682438.1 mRNA upstream 175796 14954137 ~ 14955419 (-) True LOC111195383
XM_007248429.2 mRNA upstream 195237 14973578 ~ 14984895 (-) True LOC103047892
XM_022682833.1 mRNA upstream 253932 15032273 ~ 15033061 (-) True fndc11
XR_002651608.1 other downstream 1690797 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 2147747 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 2421931 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 2723020 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 3775919 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 540303 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 653326 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 1624450 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 2055509 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 2410324 17188665 ~ 17193747 (-) False irf6

Expression Profile