RNA id: XM_007248313.3


Basic Information

Item Value
RNA id XM_007248313.3
length 2671
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC103039903
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14786322 ~ 14795751 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCACGGgttgtgggcggggcttggCGTTAGCCGCTAGCGGCTGTGAGCTGTCTGTAGGATCAGCGGGTTGAAGTGCAGCTGCTGAACTTCGCTGTGTTTCTCGGTTCTGGGCTCCAGTTCGTTTATTACCGGCTCTGTGGGATAAAGCGGGCCCGGCGGTTCTGTGTTACTGGGCTGGAGTCTGTAGCGGGCTGGCGGGGGGCTCGGTTCGCCGCTGGTTCTGCGGGTTAGCCCAGCCCAGCCCAGCCCAGCCCAGCTGCTAGCTGTTAGCTCTCTCTGTGGTTCTGagtaaacagttaaaatgtgaaTTCAGCTCCTTCATTCTCTGCTCTCAGTCATGCTTCTCTTTCCACTCTGGACCTCTccgctgttcctcactgtaagAGCTTCTGGACGATTCGGAACCACCTGAAGCCTATAGAGCTGTGTGGTCCCGGGCTGTAAACACAGGCTAAGGCTAGCTGGTAGCTGGAGGACACTGCAGGGTCCACAGGGAGCCGGTTCTGCTGGGGATGTCTGATTATTTTCTGCTTCAGAAAGAGGAAATTCTACCTAAATGGCTCTCCAGCTGCGCACTCGACTCCTGTCCAAAGAGTTCATCAATATCTCCTTTACTTCTGTAAGATCTAGAGCCCGACCAGACCAGCCAATCAGATATCTTGCAGCATGTGGAATCCTAATGACAAAACCCCAAAGATGGACGTACTGTTGGAACCAGGGAGCATTACCGGCACCCCCAACTCGGACCTTCATCAGTCTCGCAAACAAGAGAAAGCAATATTCTGAGAGAAGGATTATGGGGTATTCTATGCAGGAAATGTACGACGTGGTAGCGAACGTGGATGACTATAAACTTTTCGTTCCgtggtgcaaaaaatcagaaACTATAATGAAGAGAGCCGGGCATGCTAAAGCCCAGCTGGAGATCGGTTTCCCACCAGTGGTGGAGAGGTACACGTCTATGATCACGAACGTTCGCCCTCACCTAGTAAAAGCCGTGTGCTCAGATGGAAAGCTTTTCAACCATTTGGAGACAATTTGGCGATTTAGTCCTGGGATTCCTGGGTATCCAAGGACGTGCACAGTAGATTTTTCTatATCTTTTGAGTTCCGCTCCATCCTGCACTCCCAGTTGGCCACGGTGTTCTTTGACGAGGTTGTGAAGCAGATGGTCGCGGCATTTGAGAATCGCGCTGGTAAACTGTACGGTCCCGAGACTCGGATCCCCAGAGAACTCATGTTCCATGAGGTGCATCAGACTTGAGCCTGATCCTGCATGCCGGTTTAGCTGCTTTAGTTTGgcttgagggttttttttttattttttgtgtgtgtgtatgggggtACCACCACCTCCTTGCTCGCTCGCTCTGCCATCTTTACTTGACGTGGATTTCTTCTCATCACGGCGGCTAAGAGAGAGCAGCAGCTGGCCAACACCAGGATCTGACACCATGTTTATTTTTCAATACCTCTGTTCTGACAGTCATGCAGCTACATGCAGGATTCCCCCGAGATGGGATTactggtttatttttgtttctcaaCCATTGGATAAACCATGGATAACCTTATTATATATTCGCTTCACCTGCAGAGGAAATCGGATCCTTCACTATTGAAGAATGTTAAGAATGCCACGAATGTGGCACCACAGATCAATAAGCACTAGGGCCTTTCCATTCTTCAGTATACCCAGTTTCCAgagtgatattattattttgtataggcctgtcacaataattacaataattacgTCATTacaacttattgtacaatatatggacctCAATATATATAACTTCAATCCTATTTGCTGACCTGAATATGTAGCCCATTGTTTTTACTAGGGATGCACTTAAATAAATTGAACAAATAAATTGACAACATAAATTAAGTATTCTGAATGTATTTTTggcttttcaaagaaaaaaactataacaaaactacattttaaacCTATTTGTTgaacatttcatatttaaatgtccccaaaatataacataaaaaaactacagtatGACTTAAAATacataacttaaaaacagttatTACGTAACATGCTTTTAATTACGAATATTACAAATAtgcctttttttcctttttttttcttttttttttttttgccattttcagccaaatattcagtgcatccctagtttTAACTTAGCAAGAACATCTCATTGAGCCAACCTGGCAGCTTtgttaaaaataagtaatttaattttgttttaatatttatttaataaaaaaaaaaaacatttaccttaaaataattaaattataaaacctttgttgatttttattactgcattattatgatattattaaatcattagaTCAGCAGCtcaaatggtcttaaaatgacaatatcatCATTTATCTCCATTGTTTCTGAAACAATATAAAACCTTTAATtatgtgacaggcctatttttGTTGActctttttaagcttttaagtTTTGGATAGAGGGAGGATTTATCCATGGTACATGCATGAGATTACGGATGGTTGAAAACAGCCTTCTCTGAAAAGTAcaactgcatatttttttttatttgccatcTTGGATTATTTATAGCCAAAATCCTTTATACTGTGAAACTGCTGTAATCCCTGTAAAGTGCAATATGCTGAAAAGATAAATGGTTTTatttcaaaacaaaa

Function

GO: NA

KEGG:

id description
K18588 COQ10; coenzyme Q-binding protein COQ10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257360 lncRNA downstream 3422 14780548 ~ 14782900 (-) True G189835
TU257357 lncRNA downstream 25948 14759788 ~ 14760374 (-) True G189834
TU257344 lncRNA downstream 72589 14712883 ~ 14713733 (-) True G189821
TU257334 lncRNA downstream 76796 14707735 ~ 14709526 (-) True G189814
TU257328 lncRNA downstream 189748 14594996 ~ 14596574 (-) True G189808
TU257362 lncRNA upstream 1842 14797593 ~ 14805872 (-) True G189837
TU257367 lncRNA upstream 17247 14812998 ~ 14815031 (-) True G189841
TU257371 lncRNA upstream 30084 14825835 ~ 14830306 (-) True G189845
TU257372 lncRNA upstream 46825 14842576 ~ 14844243 (-) True G189846
TU257378 lncRNA upstream 70670 14866421 ~ 14867739 (-) True G189852
XM_007248310.3 mRNA downstream 7981 14767313 ~ 14778341 (-) True LOC103039087
XM_022682440.1 mRNA downstream 21967 14754376 ~ 14764355 (-) False LOC103038772
XM_022682439.1 mRNA downstream 22668 14754376 ~ 14763654 (-) False LOC103038772
XM_007248309.2 mRNA downstream 24380 14754376 ~ 14761942 (-) True LOC103038772
XM_007248308.3 mRNA downstream 58008 14720385 ~ 14728314 (-) True dnajc14
XM_007248315.3 mRNA upstream 51371 14847122 ~ 14856386 (-) True LOC103040538
XM_022682438.1 mRNA upstream 158386 14954137 ~ 14955419 (-) True LOC111195383
XM_007248429.2 mRNA upstream 177827 14973578 ~ 14984895 (-) True LOC103047892
XM_022682833.1 mRNA upstream 236522 15032273 ~ 15033061 (-) True fndc11
XM_022682421.1 mRNA upstream 245924 15041675 ~ 15054177 (-) True LOC103021615
XR_002651608.1 other downstream 1709806 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 2166756 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 2440940 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 2742029 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 3794928 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 522893 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 635916 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 1607040 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 2038099 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 2392914 17188665 ~ 17193747 (-) False irf6

Expression Profile