RNA id: XM_007248315.3


Basic Information

Item Value
RNA id XM_007248315.3
length 2365
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC103040538
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14847122 ~ 14856386 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTAGGCTGGTGACGTCACGGTGTAGGAAAACAACAACAGCTAGAAAAGCGCTGAGTGCAGAAGCGTTAGTGAGTTAGCATAGCGGGCTAACGGGCACAGCGCTCAGTACAGAGAACAGCGGGGCTGCAGAGAGCTTTACCTGTGTCAGGAGTCTCAGACAGGAGGAATACAGCCGTTTAAACCCGGTTACAGACCGCGGAACTGAGGTCTACAAGTGTTCGTTAGCAACAGAGCTAACGCCTAAGCTAACGGGTAACTAGTGTTTCTGAGCGCCGCTGCAGTTCGCGGTACAGCTCggttagcctagcctagctcaGCTCTGCTGTTCTACAGGATTctgataatatttaattttacagcACTCTGCTCCAGCTGTAGTTCAGCTGCTGGAGGAGTAACCGTGCTAATATCGCAGTTAGCCCGCTGCCTATGCTGTGTTCAGGTTAATCAGAGCCCCAGAGCTCCAGCTGGGTCTGAATGAAACCCAGAGTTTTAATGACaaatattattaatctacacCAGAACCCGGAGACATGACCACCGAGACGTACGTGAAGGACATCAAGCCCGGACTGAAGAAcctgaatgtcatctttattgtGCTGGAAACAGGGAGGGTCACCAAAACCAAAGATGGGCACGAGGTTCGCACCTGCAAGGTGGCCGACAAGACGGGCAGTATCAGCATTTCGGTGTGGGACGAGGTGGGGGGACTCATCCAGACCGGTGACATCATCCGACTGACCAAAGGCTATGCTTCAGTATTTAAAGGCTGTCTGACGTTATAtacaggaagaggaggagagctgCAGAAGATCGGAGAGTTCTGCATGGTGTACTCTGAGGTGCCAAACTTCAGTGAGCCCAACCCAGAGTATATGGCACTGATGAATAAGACGGGGCTCAATGACCAAGGAAACAACATTAACAGCAGCGGAAACGGTTCAGGTGCTGCTGGTGCTGATGCCACCAATGGAAACGGAGTAAATTCTCAACCTGCCAGCTCCACCAACGCGCAGTCCGGTGGGCGGGGGAGTGCCGGGAATGGAAGCAGAGCGGCAGCAGGGAGCGCCGTTAGTAACGGGAAGGAGACGAGACGCTCGGCTAAAAGATGATCAGAGCACAGAGCTCCTCGTATATCAGGAGATGGAGCAGCATTGGGAGATAATGCGTTTCAGTAAAGACTCTCCGTCGTGCTCTGCTCATCTCATCACCCAGATCACAGATTGAAGCAGGATCCAGGAAAAACTGATTCTCACAACCAGATATTCCTTTACATTTGATGGAACACGGCATGTTCATCATGTTAGCCAGATATGAACATATTCAGCACATTGAAAAACAAAATCTACTATAAAAATATGACCTGTCCTACAGAAATGGTTGGAATTATGAAGTGTTTAACTGAGGGAGTGCAATCTAAACTGCTCTGTTGGTTCTTATTATCAGGAGGTTGCCAGTTCAGTTTCCCTCAACGCAAAACGCAATTATGTTGCCAGCCTTCTCAGAgggcacagttggccttgctcatTCACTCTAGTTGGGGGTGAGGGTTTATTTAGTGCAATTATTTCAGTAGGCCTGTCTGATAACCACATTTgcttggacaatatattgtcccaaaacaatttattatttaaaaattaaattttatatccTAATTCTATATCCTAAGTAAATTAAACatgaatgaaatattttatttgtattgaaCAAAAATAGACAAGACTGAGGACATGTCCATTTGTTGTACGATATAAGTCAATTtcgtaattattgtgacaggcctacatttcagagctgtatgtaatggACGCTGTTAAACAAGTAAAActtgtgaaagaaaaaaaaaaacaatttcttgTTTAAATTTGATCAAAATTAAACTATTTCAATCTCAATTCGAAATGCTGTATAGTCCAATAGGACTAATCCTTGTCTATGACAATGACTAAACCTAATCTGGGactatacagcattttaaatagagattCTCCAGTGAAAGAACAGAATACAGTCCAGGATTACGCTCAACTCCTAACCAGAAAATGAACCCTAAGACAGTTAAATGTATCCTAAAGTGATGGATGAGGAGCGTCTAAGCATGGCTGTTTTTAACTGtatgatttttgtgtgtatttggaaTACATGTGAGAATGACTACTTTAAATCATatgtttaaagtttaatttgTCACCAGAATAACCttcaaaaaaaaagccaaatagTGCATACAAAGATTATTGTCTTAATTTGTACAGAGATAAAAACAAAGGGCAATAGTTTAATGAGTTTTAATTAGTCTGCTGTTGTTTCTGGTCATGTTGAATGTCCCATGTAAGTAAAAATCATTTTGTATATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257372 lncRNA downstream 2879 14842576 ~ 14844243 (-) True G189846
TU257371 lncRNA downstream 16816 14825835 ~ 14830306 (-) True G189845
TU257367 lncRNA downstream 32091 14812998 ~ 14815031 (-) True G189841
TU257362 lncRNA downstream 41250 14797593 ~ 14805872 (-) True G189837
TU257346 lncRNA downstream 47494 14717436 ~ 14799628 (-) True G189823
TU257378 lncRNA upstream 10035 14866421 ~ 14867739 (-) True G189852
TU257393 lncRNA upstream 49790 14906176 ~ 14914065 (-) True G189867
TU257499 lncRNA upstream 183595 15039981 ~ 15041242 (-) True G189951
TU257514 lncRNA upstream 203570 15059956 ~ 15197059 (-) True G189958
TU257512 lncRNA upstream 245342 15101728 ~ 15135426 (-) True G189956
XM_007248313.3 mRNA downstream 51371 14786322 ~ 14795751 (-) True LOC103039903
XM_007248310.3 mRNA downstream 68781 14767313 ~ 14778341 (-) True LOC103039087
XM_022682440.1 mRNA downstream 82767 14754376 ~ 14764355 (-) False LOC103038772
XM_022682439.1 mRNA downstream 83468 14754376 ~ 14763654 (-) False LOC103038772
XM_007248309.2 mRNA downstream 85180 14754376 ~ 14761942 (-) True LOC103038772
XM_022682438.1 mRNA upstream 97751 14954137 ~ 14955419 (-) True LOC111195383
XM_007248429.2 mRNA upstream 117192 14973578 ~ 14984895 (-) True LOC103047892
XM_022682833.1 mRNA upstream 175887 15032273 ~ 15033061 (-) True fndc11
XM_022682421.1 mRNA upstream 185289 15041675 ~ 15054177 (-) True LOC103021615
XM_007248319.3 mRNA upstream 199783 15056169 ~ 15061088 (-) True tp53rk
XR_002651608.1 other downstream 1770606 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 2227556 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 2501740 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 2802829 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 3855728 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 462258 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 575281 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 1546405 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 1977464 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 2332279 17188665 ~ 17193747 (-) False irf6

Expression Profile