RNA id: XM_022682423.1


Basic Information

Item Value
RNA id XM_022682423.1
length 4612
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC103042998
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15100475 ~ 15130469 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTACGCTCAATCCCATTCACAACGGGCACAGCGCAATTCCCTGCCTATCACACTGGTGCTGCCCGTTTCGTCAGCAGTGCGGAGCGGCCGACAGCCCGTCCACCGTGTCGGTCGTGCGTGTTGTCCGTGTCCCTGTGGTTCAGTAGCCCCCGGTTCTCGGTTCCCGTCTCCCCTCCCGGTTGTTGTTTGGTCGTGAGGCCGCAGATGGCTGTCTCTGCAGCCGCAGTCTGAGCGCTACGCTCCGGTCCGCTACCCGCTGCTCCCCGGCATGACCTCCCCCAGCAGCGGCAGCGCGGCTCGGCGTCGGTGAATGGGATTTATCGCTGATTTATCACTTAATCGTTTTAACCGCGAGATTTGGGAGATTTAACCGGTTTACGGCTGATTTAAGGCGGCGGATCATCAGAAATCAAAGCCACTGTTAAGGTGCAGTGATGGGGACGGGGAAGAGTAAAGAGGGGAAGGGGAAAGATCCGGGACAGCGTTCCCTCAGTCTGGACGGAACCATAGGTATGGGTTCCTCTAGTGGACACCATTTCAGTTCCGGCCCCCAGACCCAAACGCCCAACCGGAGCCCGGCGGTGGGGTCCAGCACACGCATCAACACCTACCACCCCAACAACACAGACCACCCGCAACTGTTCGGAGGCGTGGACCACCCGGGCTCCATCATGTCCCCTCAGAGAGGAGTCACTACATTTGTGGCGTTATATGATTACGAGTCTCGGACGACTGCGGATCTGACGTTTAAAAAGGGCGAGCGTCTGCAGATCCTCAACAACACGGAAGGAGACTGGTGGTTGGCTCGTTCTTTGACTACGGGAGAGAGTGGATACATCCCCAGCAATTACGTGGCACCATCTGACTCCATCCAAGCTGAAGAgTGGTTTTTTGGTAAGATAACTCGTCGTGATTCTGAACGACTGCTGCTAAACATCCAAAACAGGAGGGGAACGTTTCTCGTTAGGGAGAGCGAGACGACTAAGGGTGCGTACTGTCTGTCTGTGCTGGACTACGATAACATGAAGGGGCTGAACATTAAGCACTATAAAATCCGTAAGCTGGACAGCGGCGGCTTTTACATCACATCCCGCACGCAGTTCACCAGCCTGCAGCAGCTCGTCCTCCACTACCGCACACATGCAGATGGGTTGTGTCACGTGCTGACAGATATATGTCCCATGCTGAAGCCGCAGACACAGGGTCTGGCCCGAGACGCCTGGGAAATCCCCCGCGAGTCGCTGCGACTGGACGTGAAACTGGGCCAGGGCTGCTTTGGGGAAGTGTGGATGGGTCACTACCGCAGCTCACATCTGGGTCACTACTGCAGCTCTTATCTGGGGACGTGGAACGGGACGACGCGAGTAGCCATCAAGACTCTGAAGCGCGGCACCATGTCTCCTGAAGCGTTCCTGGAGGAGGCCCAGGTTATGAAGAAGCTTCGGCACGAGAAGTTGGTTCAGCTGTACGCCGTCGTCTCAGAGGAGCCCATTTACATCGTTACAGAATACATGAGTCAAGGCAGCCTGCTGGACTTCCTGAAGGGAGATAAGGGGAAGTTCCTGAGGCTTCCACAGCTGGTTGATATGGCCTCTCAGATTGCTGCTGGCATGGCGTACGTGGAGAGGATGAATTACGTACACAGAGATCTGAGAGCTGCCAACATCCTGGTTGGAGATAACTTGGTGTGTAAAGTTGCAGATTTCGGACTGGCGCGACTCATTGAGGATAACGAGTACACGGCCAGACAGGGTGCAAAGTTTCCTATTAAATGGACCGCCCCCGAGGCTGCGCTGTACGGCCGATTCACCATCAAATCAGACGTCTGGTCTTTCGGCATATTACTAACTGAGCTGGCCACCAAAGGACGAGTTCCGTACCCAGGAATGGTTAACAGGGAGGTGCTGGATCAGGTGGAGCGAGGGTACCGGATGCCGTGCCCGGCAGAGTGCCCGAGTTCCATGCACGAGCTGATGCTGAGCTGCTGGCGTAAGGAGCCGGAGGAGCGACCTACGTTCGAGTATCTGCAGGGCTTCCTGGAGGACTACTTCACCTCCACGGAACCGCAGTACCAGCCGGCGACAACCTCTAGGGCTtccagagagagtgagagagggcgGGGACTGGACTCGAACCCGGACGTATGGGTACAAGTCTcaatctatgtgtgtgtgtgtgtattggaaaGGCGTAATGAGGGGCGGATTTTACAGAAAAGCTCTCTTTCTGCTTTGtggatgaaaaagaaaaagatattcagaactcctcctcctcctccagatCCTGATTGGGGCAGTGAAAGACTGTGGTAAAGACACGCCCCCTATAAACTCCCGTCCTGTTCCaggactgtattttttttcacccaGCGGAGTACTGCCACGTGCCCAGAGGTGCCAAAGGACTAATTCATTTGTGTGCTGTTATCTTCTCCtgctgttttttcattatttttttttttcattatttttcattgtGTTTCCTGCAGCAGTAAGTGTTTGGCGTTTACTTTATTTACCGTACTTttcctctacacacactcttaaaaatgGCAGTGCTACTAAGGGCAATAGAGCCATAGAAGAACTGGTTTtgcctctaaaaaaaaacaatttcgtTAAAAATAGATGCTAATTTGAATGTGAAGAATCTTTTTAACACTGTATCTGGAGAACTTCCTGTCCTGAACATGTTTGTTGTTTATCCTAACCTAATCAAGCTAATAATCAGATCATTTACAAAGCcacaggaccttcttcctgCATTTACTTTATTAACCCAACCTCCTTTTACATCAGCTGTTTTGGTTCCAACCAAACTGAATAGTCCAAAGGTCCAAACCAAGCAAGGCTGGTGTGAAAGCAGCCTACAATGTGCAGCTTCTCCAGGACCTCTATTCTCTATTACTTGCATGGAtacaaaagtggttcttctgtggCATCGTTTTAAGAACCATTTCTAGCACCttcatttttaagagtgcaggcTAATTAGTTCTATTGGTACAAACAAAGGGCTGCTATTGATTACCCATAATCACAGCACAGGCTACTTTATTGTAGCTTTTattcatgataaaaaaaaaaaaaaagaaatcttaaaGATGCACATATCGTCATATTGAAACAAAATCATAACATAACAAAAACGAATTAAAGATTACACAGATGTGTAGATGGGTCTCGTTAAGCtgatatgtgatctatttattCAAGTTcatgaaaacagaaaataattaagcatttttttttcatttatttctcatATTTGGAGCCTCTATTAATACATGTAATACTTTTAATCTTTCTGATTCAGGTGGTTTCCGTCCCAATTCCtatacttttaaaaactattaaacattaattttccttttgcttttttttttttgttttattctaatttaaattgtaatttaaatcacagctcataaataaaaaaaaaaaataaaattaaacattcatgtaataattatttttttttgttgtggttgattttacttaaactacaaataaacagttactgaCTCCTCGCCTTAGTGCTTCACCGTTGCCTCATAACCCAAAATTGAGTGCAGTATCACCTGCTTAAACCCGGCACTACCTGGGTACTCGAACATGGAAAACCATCCCGTTCTACTCGGGGACCATAAAACGCACAAGATCAGGCATGTAATATGTATAATTCAATGATTAATATGCCTTACTGCATATTACATTTAACACACCTTAACCTTAGGAACaatggtgtcagaagtggttgtGTTCAAATTGGATAGAAAGCTACGATAGCTGCTCGAAACTGAAGACTGTGCCTTTCAAAAAGAGTAAATCAGCTGGAAGTTTTCTACTAGTGCTAAGTGTCCTAAACGTCATTCTCCTTCTTAGTACACTATATGGCCAAAATTATTGGGATGTCTGCTAAACTCATTTATCTTTACTGTCATAACTTAAATGAAGGGTATTAAATTAGTTTATCTGTGTTTTGTTGGAGTAAAAGATTCTGGTGTAAAAGCCTTCAGCAACAGGAGTACTGGATAGATCTCCATCATTCTCAGTTCTAGAGGGCTTCATACTCCTAGACTGGTCCACACCTCGCATTACTTGGCACGGTACCAGTAGGTCAATGTTGATctgagtcctattctattggcaatccTTCTCTACActgactagacaagctgtttgtgtgcatttgcacatctttgtcAGCGGAAGTGAGTGCAACCTCCAAGGACCTACATGCCTTCATTAATTAGGGGTATCCATACATATATGGacatatatagtgtatgtatttTCAGTCTGAAGGTTTTGGAGATGGAACATTGGTAGGGTTCTGGTTTGTCATGTAGCGCTGAAAGGTTTGAACTGGTTTGAAGAAAGTTGGTCACATGGTCTAATGTCAAAGGGGCCTTATGTCTCTCCTCGCCTACGTCGTGCACCAGTCTGACTATAAGGGGAAATctataatcttattttcttatttttcttttttttttttttaagcaatctAGATAGTGAGACCCAAATATGTCATACATTTAATGAGACTGTGCGTTTAATGTGTCGACACCTTAAAGCGTTTAATCCGctataaaatgcattatttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257499 lncRNA downstream 59233 15039981 ~ 15041242 (-) True G189951
TU257393 lncRNA downstream 186410 14906176 ~ 14914065 (-) True G189867
TU257378 lncRNA downstream 232736 14866421 ~ 14867739 (-) True G189852
TU257372 lncRNA downstream 256232 14842576 ~ 14844243 (-) True G189846
TU257371 lncRNA downstream 270169 14825835 ~ 14830306 (-) True G189845
TU257549 lncRNA upstream 67962 15198426 ~ 15202766 (-) True G189987
TU257566 lncRNA upstream 79153 15209617 ~ 15284715 (-) True G190001
TU257569 lncRNA upstream 85174 15215638 ~ 15217350 (-) True G190004
TU257794 lncRNA upstream 222973 15353437 ~ 15354632 (-) True G190171
TU257807 lncRNA upstream 257631 15388095 ~ 15451570 (-) True G190183
XM_007248328.3 mRNA downstream 4333 15090225 ~ 15096142 (-) True LOC103044311
XM_007248321.3 mRNA downstream 12786 15073621 ~ 15087689 (-) True LOC103042686
XM_007248319.3 mRNA downstream 39387 15056169 ~ 15061088 (-) True tp53rk
XM_022682421.1 mRNA downstream 46298 15041675 ~ 15054177 (-) True LOC103021615
XM_022682833.1 mRNA downstream 67414 15032273 ~ 15033061 (-) True fndc11
XM_022682433.1 mRNA upstream 4311 15134775 ~ 15162761 (-) True LOC107197607
XM_022682834.1 mRNA upstream 106518 15236982 ~ 15282579 (-) True LOC111195446
XM_022682441.1 mRNA upstream 166195 15296659 ~ 15305207 (-) True LOC103025355
XM_007239905.3 mRNA upstream 188179 15318643 ~ 15322175 (-) True LOC103024926
XM_022682443.1 mRNA upstream 228711 15359175 ~ 15407969 (-) False LOC103026384
XR_002651608.1 other downstream 2023959 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 2480909 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 2755093 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 3056182 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 4109081 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 188180 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 301203 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 1272327 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 1703386 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 2058201 17188665 ~ 17193747 (-) False irf6