RNA id: XM_007248359.3


Basic Information

Item Value
RNA id XM_007248359.3
length 2031
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC103027815
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21412689 ~ 21428618 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGAGTCTCTGTTTTACCGCATAGAGccgaaaagagagagagaggagtcgAGCTGAGGACGAGCGAGAAGACCAGCCTATAGAGGGTCTCTGAGGGTCTCTGTCTTTGATGTCTGAACGAACATACAGAAGAGATAACGAAGACTCTGACTGCATGATCTTCGTCCTACATCACCTCCATCATCTTCctcactatttctctcttttcagcCTCCTTGgtttgtcctctctctctctctctctctctctttctttctctctctaatcaGCTTCTATAACAGTCTCACGTTCTCTCAACACCATGGAGACTGGGAGCCCACGCAAGATCCAGTTCACGGTCCCGTTGCTGGActctcacctggaccctgaagcTGCTGAACAGATCAGGAGAAGGCGGCCAACTCCAGCAACACTGGTAGCATCCAGTGACCAGTCCTCTCCAGAAATAGATGAAGACCGTCTTTCCAATCACCTCTACAAGCAAGCTCTGCTGAATTCACCCCGACAGAGACGGAAAGGAGCCAAAGGAACGCCAACCATGAAAGAGCTGCAGTTCATGGTGGAGCATCACCTGTGCCGGCAGCAGCAGGGCGCGGCGGACGAGTCGTCAGAGAGCTGTTTATCGGAGAGGACGAGTCCGGACGCCGGGCCCGGGGGGGAGGAGCTGCCGGTGGATGAGGTGGGCTGGAGTATAGCGGAGAAGGAGACGGTGGAGGCCCTGGAGAAACTGCGCTGCCAGGTGGAGAGTTTATCAGAGGCAGCAGGAGGAACAGAATCAGAACCGCCTCTTACCAGGGAACTGCCCGGTTCTGCTGCAGCCGGACCGGCAACATCCAAACCACCAACACCAGCAGcagcagcagcagcagcagcagcaggtcgcTCCTCTGGGGATGCAGCAGAGCCGGATGGGTCCCGGCGGATCCGCAGTGAGCGACAGTAGAAACACAGTGATGATGAGGAGGTGGATCAGATAAACAGAACAGAACCCTGGGGACGGGTTCACGGCCCGGACACTGGTGGATCCACACTGTAGACAATCTGAGgacttttattctctaaatcagcaaaatgtttaaattccTAACAAAATTAACTCACACTCCCAAATTTACTCAATTATTTTCATAACATTCAGATTCTGACTAAACTAAATCCCAGCCTTCAAGCTGAAACTCACATCTTCTGTAAAGTTCTGTAAAGTTCTATTAATGTTCTATAATGTTCACGTCCCGACTGAAGGACAGGTTTGTGGTTCTGAGCCTCACCCGGACCAGCAGTGGGCGTGTCCTTCACTATTCCGAATTCAGGGAATTCAGCGTTTTTCCACGTCCGAttcctgttttcctgttttatcTGATTCTTCTTTGCTTGTTTCAtagttttatgtaatttatgacCCACATGTTCAGTGTTCTACAACAGTTTCAGTTTTAAACTAAAGCCACTGTAGTCCTGAATCCCGCTGCTGGAGTGGGAGGAGTTTTTATGTAATTTCCTGACCTGCAGCACAAACCCTCACTGAAACCAAGATCCCAAATTAATACCAAGAAATTTATACCATGATCAATTTCTATGACTAATGAAAGATTTTACAGCAATGGATAATGGAACAATAGTATGATAGTATAGAGTAATAGAATAATGAAGCAATTGaagtatgaaaaaaattaataaagggaCACCAGAATAACTGTATATTGATACTAAAATAATAGTATACTGAAATAATAGAAgtaataaaacagttaaataaTGGAATACTATAGTAATGAAATGAAAGAGTAATGTCATAATGGAGTAAAGAAACATTGCATTAATTGTAATAATGGAGTAATGGAAAATTggcataattaattattatgaattttaccatagttagttccgaccctgcaatgtgattggctgacaggCATTCTATgggtgacattatcagccggtaatgcaccaTAACCGAAGCTCTTTATGTATTACTTTGCCACATACAGGCAACCTATGGAGTAGGATATacagctccaaaaaaaaaaaataa

Function

GO: NA

KEGG:

id description
K08050 PPP1R1A; protein phosphatase 1 regulatory subunit 1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260224 lncRNA downstream 41910 21303518 ~ 21370779 (-) True G191791
TU260215 lncRNA downstream 132937 21279003 ~ 21279752 (-) True G191787
TU260104 lncRNA downstream 173167 21173472 ~ 21239522 (-) True G191691
TU260076 lncRNA downstream 305867 21105440 ~ 21106822 (-) True G191664
TU260072 lncRNA downstream 309476 21099347 ~ 21103213 (-) False brk1
TU260257 lncRNA upstream 1402 21430020 ~ 21436453 (-) True npff
TU260283 lncRNA upstream 97541 21526159 ~ 21528036 (-) True G191812
TU260302 lncRNA upstream 281298 21709916 ~ 21711285 (-) True G191827
TU260335 lncRNA upstream 404524 21833142 ~ 21833495 (-) True G191858
TU260349 lncRNA upstream 431508 21860126 ~ 21924848 (-) True G191870
XM_007248356.3 mRNA downstream 64305 21342702 ~ 21348384 (-) True LOC103026802
XM_015607177.2 mRNA downstream 297766 21112480 ~ 21114923 (-) True gpx1
XM_007254551.3 mRNA downstream 309471 21099347 ~ 21103218 (-) True brk1
XM_022682601.1 mRNA downstream 315449 21093650 ~ 21097240 (-) True LOC103031955
XM_022682600.1 mRNA downstream 340271 20837118 ~ 21072418 (-) True itpr1
XM_022682851.1 mRNA upstream 1398 21430016 ~ 21433834 (-) False npff
XM_007248365.3 mRNA upstream 13670 21442288 ~ 21498063 (-) False itga7
XM_007248364.3 mRNA upstream 13670 21442288 ~ 21498063 (-) False itga7
XM_022682603.1 mRNA upstream 13670 21442288 ~ 21498063 (-) True itga7
XM_022682604.1 mRNA upstream 14087 21442705 ~ 21498063 (-) False itga7
TU259248 other downstream 2510432 18897509 ~ 18902257 (-) True LOC103032794
TU259141 other downstream 2649261 18711234 ~ 18763428 (-) False LOC111195399
TU259137 other downstream 2683893 18709030 ~ 18728796 (-) False LOC111195399
TU258958 other downstream 3097580 18311506 ~ 18315109 (-) False LOC103041510
XR_002651616.1 other downstream 3237572 18167418 ~ 18175117 (-) False LOC111195395
XR_002651627.1 other upstream 79434 21508052 ~ 21508261 (-) True LOC111195406
XR_002651626.1 other upstream 82306 21510924 ~ 21544831 (-) False elmo2
TU260340 other upstream 418351 21846969 ~ 21851642 (-) False G191862
TU260341 other upstream 418351 21846969 ~ 21851642 (-) True G191862
XR_002651628.1 other upstream 920729 22349347 ~ 22362457 (-) True alas1

Expression Profile