RNA id: XM_007248365.3


Basic Information

Item Value
RNA id XM_007248365.3
length 3965
RNA type mRNA
GC content 0.55
exon number 25
gene id itga7
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21442288 ~ 21498063 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGGGGAACACACAAGGGACACCAcggactctcacacacacccacacacaccctcacacacacacacacacgcacactaacacacacacactgaagccCATTAGGCCGGCCGGTATCGGCTGTCAGAAGCAGCAGTgcggagagagacagagggacagacggacagacaggGGGAAAAGACAGTTGGACGGACAGGCAGTAGTGGGACAGGGGGAGGGGCCTGCTGTGGTTTAtggactgtactgattctgctggaccccagagagagagagagaggacccACACCAGCAGCAGGACCCTCagcagtgtgtatgagtgtgagtgATTATGTGTAGGGAGGACAGTGCTATGGATCTCCAGTCCACACACAGGAGGACTGCTGGACTGACCGGGCCactggtgctgctggtgcttctTCTGCTGGCCCTCACTGCCCCAACCTCAGCCTTCAACCTGGACACCACAGACACCCTGAATAAGGAGGGCGAGGTGGGCAGCTTCTTCGGCTTCTCGCTCGCCCTGCACCAGCAACTCTCTCCACAGCCCAAGAGCTGGCTCCTGGTTGGGGCTCCTCGGGCCAGAGGTCTTGGGGCACTGAGGAACAGTCACCCTGGTGCTTTATACCGGTGTCCAATCACAGCAGAGGAGTATGACTGTGAGCGAGTGGACATTGATGGAGATGTGAGCCTGGATCGGGAGAGTAAGGATAACCAGTGGCTGGGTGTGACGGTGAAGAGTCAGGGGATTGGAGGAAAAGTGGTGGCATGTGCCCACCTGTACGAGCTGAGGCAGCGGGTCAATCAACTGTCTGAGACCAGAGACCCAATTGGACGCTGCTACATGCTGAGTGAGGACCTGACGGAGAGAGACGATCTGGACGGAGGAGAGTGGAAGTTTTGCGAGGGTCGGCCGCAGGGCCATGAGCAGTTCGGGTTCTGCCAGCAGGGACTGGCGGCTAGCTTTACACCGGACAATAACTATGTCCTGTTTGGAGCGCCTGGAACTTACAATTGGAAAGGGCTGTTGTTCATGGCGAGCCCTGTTGAGGACGCACTGGTGTACAAAACTCTGGAACCATCCACCCGGCATGCGTTTGAGGACGTAGCTCAGAATAGCTACCTAGGCTTCTCTGTCGATTCAGCTAAAGGTATAATGAGCCGGGGGGAGCTGACCTTCGTGGCGGGAGCACCGAGAGCCAATCACACGGGGGCGGTGGTGCTGCTGAAGAAGGACAACGTGTACCGGCTGGTGCCAGAGTATATCTTGTGGGGGGAGGAGCTGGCATCCTCCTTCGGCTACTCTGTGGCCACCACCGACCTCAATTCGGATGGCTGGACTGATCTAATAGTGGGAGCGCCAAACTTCTTTGATCGCAAAGCTGAGATCGGTGGAGCCGTGTACGTGTTCCTGAACCCGGCGAGCCACTGGGAGAAAGCTAGGCCCATCCGCCTCAATGGAACCTACGACTCCATGTTCGGCATGACGGTCAGCAGCGTCGGGGATCTGGACCAAGATGGTTATGGAGATGTTGCAGTTGGAGCTCCATTTGATGGAGATGGGAAGGTGTTCATCTTCAGAGGATCTGCCAATGGCATTGATACTAAACCCTCTCAGGTTCTGGACGGGTTAAATGCAGGTGTTAAACGCTTTGGATATTCGATATCAGGAGGTCTAGATATTGATGGAAACCTGTACCCAGATCTAGCAGTGGGTTCCCTCAGTGACCAGGTGGTTCTCTACAGGTCGCGTCCGGTAATCCATGTGGTCAGGGACATTTCCTTGGAGCCTCAGCCCATTGACCTGACCCAGCAGAACTGCCAGGGCAGAGACGGCGTGTGTGTGCGGATCGAGGCATGTTACACTTACACCGCCCACCCAGAAACCTACTCACCTCACATCACTCTGAGTGTGCACTTTGAAGCAGACACAGAGCGCAGGAAATTGGGACTGCCCCACAGAGTCTACTTCCTGGGACGGGCCGCGTCCGAGCCCGAGTACGTCCACACTAAAGATCTGGAGCTGAGGGGTCAGAAACACCCAGCCTGCCAAACCGCCACCTTCGTACTGCAGGAGAACATCAGGGATAAACTGCGTCCTATCTCTCTGGCGATCACACACACCATAAAGAAGACCCGGCACCAAGGCCACTTCGGGGATAAGCACCTGGGACGGCTGAGTCCAGTTCTGGGAGTCAGTCTCTCAAACACGTACTACTCTGAGGTCAATTTCCTAAGAGAGGGCTGTGGTGAGGACAAGATCTGCCAGAGCAACCTGAAGCTCAGCTACCAGTTTGGCACCAGAGCTCCCACTTCAGATATCTTCACCCCATTACCACTGGACGAGGACGGTGTTCCTGTGTTCTCGCTGTCGGATCAGAGGTCAGTGGTTCTGGAAGTGACAGTCAGTAACACGCCCTCTGACCCAGAGAACCCGCAGGAGGATGGTGATGATGCCCACGCTGCCCAGATGGTGGTCACTCTGCCCAGCACACTGTCCTACTCTGGCTTCAGAGGACAGCAGGTCGTGTGCCAAGCCAATCAGAATGGCTCCCAGGCAGAGTGTGAGCTGGGAAATCCTGTCAAAAGAGATGCAGTGCTGAAATTCTACATCATACTGAGCACCTCGGCGATCACCATTGAAACAACGTCTCTATCTGTAGATCTTCTGATGTCCACGATCAGTGAGCAGCCTGGTCTGACTACAGTCACAGCATTCGCCAAAGTAGTGATAGAGCTCCCTCTGGCGGTCAGCGGACTCGCTCGTCCTCACCAGCTCTTCTTCAGTGGGGAGGTGAGGGGCGAGAGTGCGATGAAGACTTTGGACGATGTGGGCAGTGAAGTGGAGTATGAATTCATGGTCACCAACACCGGCCCGTCCGTCCAGACTCTCGGCTCGGCGTTCCTGAACATCATGTGGCCTCATGAGCTGGCAAACGGGAAGTGGCTGCTGTATCCATCCGGCTTGCACATCGAGGGTCACCCGCAAACCCACTGCACCCCCAAGTCAGCCCTGGACCCCCGAGGACTGCGGCCCAAAGAGAACCACGTTCAGAACCTGAAGGCCAGAAGGAAGACTCGCTCACAtccagaggaagaggaggaggaaggtaAGACCATGACGAAGGGCGGCCCACCCAATACCACGCCCGCTGTGGCCGCTTCTGAGAGGAGGAAGTCTCTGAAACTGgactgTTTGTTGGGTTCTGCGCGTTGTGTGCTTCTCCAGTGTCCGCTGCACAGTTTCTCGGGTTCGGCCTTATTCAGGATCAGCGCCCGTCTGTGGAACACCACATTTATAGAGgAGTTCTCAGCGGTCAGTGCGCTGGAGCTGCTGGTCAGAGCGAACATCACCGTCAAGTCCAGCATTAAACATCTAGTGCTCAGAGATGCTGCAGCACAGGTTCCAGTAATGATCTACCCAGAACACGGGCTTTCAGACCAGTACTGGATCCCCTGGTGGATCATCCTGATCGCGATTCTGGCCGGAGTTCTGGTTCTGGCTCTGCTGGTCTGCATTCTCTGGAAGtgtgGGTTCTTCCGGCGGGCCCAGTATAAAGATAAGGTTCCTCAGTACCACGCTGTGAAGATCCCACGACAAGAACGTTCTCAGTTCCAGGATAACAAGTCCACCGTTCTACACAAGAAGGAGTGGGCGACCCACTGGACTGACGTGTCCGGGTCCTAATGTTCTGGAactttcctttttcttccctccctcGCTCGTCCTCAGCGGACCCGGCCCGAAGCGTCCCGTCCCGACGGCAGCACCTGGACGCTGGGCACCTTTATACTGCATAGACTTTATAACTGCTACctttactaacacacacacacacacacaccttcacacagcTACATTAGAGTACACAACTAAACCCATAGAACTGCTGTGTGCACTGAAACTTGTCCAAAATGTCCTATTAAAAGTTCTACCAAAGGCCTACAGTACATGCAGATGTGCctata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260257 lncRNA downstream 5835 21430020 ~ 21436453 (-) True npff
TU260224 lncRNA downstream 71509 21303518 ~ 21370779 (-) True G191791
TU260215 lncRNA downstream 162536 21279003 ~ 21279752 (-) True G191787
TU260104 lncRNA downstream 202766 21173472 ~ 21239522 (-) True G191691
TU260076 lncRNA downstream 335466 21105440 ~ 21106822 (-) True G191664
TU260283 lncRNA upstream 28096 21526159 ~ 21528036 (-) True G191812
TU260302 lncRNA upstream 211853 21709916 ~ 21711285 (-) True G191827
TU260335 lncRNA upstream 335079 21833142 ~ 21833495 (-) True G191858
TU260349 lncRNA upstream 362063 21860126 ~ 21924848 (-) True G191870
TU260360 lncRNA upstream 459778 21957841 ~ 21958432 (-) True G191880
XM_022682851.1 mRNA downstream 8454 21430016 ~ 21433834 (-) False npff
XM_007248360.3 mRNA downstream 13670 21412689 ~ 21428618 (-) False LOC103027815
XM_007248359.3 mRNA downstream 13670 21412689 ~ 21428618 (-) True LOC103027815
XM_007248356.3 mRNA downstream 93904 21342702 ~ 21348384 (-) True LOC103026802
XM_015607177.2 mRNA downstream 327365 21112480 ~ 21114923 (-) True gpx1
XM_022682606.1 mRNA upstream 12861 21510924 ~ 21544831 (-) False elmo2
XM_022682608.1 mRNA upstream 12861 21510924 ~ 21544831 (-) False elmo2
XM_022682605.1 mRNA upstream 12861 21510924 ~ 21544831 (-) True elmo2
XM_007248379.3 mRNA upstream 52692 21550755 ~ 21570651 (-) False arfgap1
XM_015605612.2 mRNA upstream 52692 21550755 ~ 21570651 (-) False arfgap1
TU259248 other downstream 2540031 18897509 ~ 18902257 (-) True LOC103032794
TU259141 other downstream 2678860 18711234 ~ 18763428 (-) False LOC111195399
TU259137 other downstream 2713492 18709030 ~ 18728796 (-) False LOC111195399
TU258958 other downstream 3127179 18311506 ~ 18315109 (-) False LOC103041510
XR_002651616.1 other downstream 3267171 18167418 ~ 18175117 (-) False LOC111195395
XR_002651627.1 other upstream 9989 21508052 ~ 21508261 (-) True LOC111195406
XR_002651626.1 other upstream 12861 21510924 ~ 21544831 (-) False elmo2
TU260340 other upstream 348906 21846969 ~ 21851642 (-) False G191862
TU260341 other upstream 348906 21846969 ~ 21851642 (-) True G191862
XR_002651628.1 other upstream 851284 22349347 ~ 22362457 (-) True alas1

Expression Profile