RNA id: XM_015605611.2


Basic Information

Item Value
RNA id XM_015605611.2
length 3539
RNA type mRNA
GC content 0.46
exon number 12
gene id arfgap1
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21550755 ~ 21570651 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGAAATGCCTTGCGCTGCCAACGTAGCAAACCGAGCCCCGCAGTACCGGAGACCCACCATCCATTCCGCTGCGGTTCGGTTCTGAGCGGTGCGGTTCTGTAGAGGCCGGGCAGTGCTGACTAGGCTGTAGTGGACGGGTTTTAATCAGTAACAGCGCTTTAAATCATTcgttatataaataaacagctgcccggttagctttagctttagctgctaCTACTGAAAACCAGCCGGTTTCTCTCTctgcgttagcattagcatcctcAGATACAGACAAGATGGCGAGTCCCCGGACCAGACGAGTGCTGAAGGAAGTCAGGACTGATGATGGGaataatgtgtgttttgagtgCGGGGCGTTTAATCCGCAGTGGGTCAGCGTGACCTATGGTATATGGATTTGTCTGGAATGTTCTGGAAAACATAGGGGCCTTGGGGTCCATCTCAGCTTTGTGAGATCAGTTTCGATGGATAAGTGGAAGGATATAGAGCTGGAGAAGATGAAGGCGGGGGGGAATGAGAAATTCCGGCTATTTCTGGAACTCCAGGATGATTATGACCCCAACTggactttacaggagaaatatAACAGCAAGGCTGCGGCTCTGTTTCGGGACAAGGTGGCTACTCTAGCAGATGGAAAGGAATGGTCCATTGAGAATTCTTCTGCTAAAAATTGGACTCCTCCCCAACCCAAAACCGGACTCTCCGCCTCTCACAGGAGCAGTGCTGGTGCAGCGCAGCATTCATCACACTCTGATAAGGCCTTTGAAGACTGGCTGACTGATGACGTCAACTCCTACCAGAGTGGTGGAAGTGGCCAGGAGAACCGTTATGTTGGCTTTGGTAACACCCCCAATCTTCCAAAGAAGGAAGATGATTTTATTAATAACGCCATGTCTTCCCTTTACACGGGCTGGAGCAGTTTCACTGTGGGCGCGAGCAAGTTTGCTGCTGTTGCGAAAGATAATACGGCAAAACTTGCCAACCAGGCTTCCATGAAGGTAAAGGATGGAAAGTTGTTTGATGAGATGACAGTCGGCATCACCGGGCTCGCCGCCAAGGTTCAGGGAGCTGGAGCTAAAGGCTGGAAGGATATGAGCTCATTCTTTGCAGGAAAACCAGATTCTGCTGATggaTCCACAGGTGGGGAGGGCTATCAGAACATGGATCCCTCCAGCGGCTACCAGAACAGTGAGGGGGCGAACCAGGACTTCTGGGAGACCTTCGGCAGCAACTCCAAGCCCAAGAAGTCGCCGAGCAGCGATAGCTGGACCATCGCCGACCAGTCCGCCGGGGAGAAGAAGAGCTCGGACAGCTGGGACAACTGGGGCTCCGAGGCACCGTCCAACAACAAGCACAGCACTGGGGACAGCTGGGAGGCCTGGGACAACAACTGGGAGAGCGCCGGCGAGAGCAAGGGCAAGAAGAGCGCCGCAAAGGAGGAGGAGTCGTGGGGCGGGGCCGACTGGTAGACCCTCCCTTTGCTCTGGACTGTCGTAACGACCCATAGTCGAACTGATTACAGCCGGTTCCCCGCGGTTCTGGAAGCGGGGGCGGTCCGGTTCTATGTGCTGTTGTCAGGTGTGTTTCTGAGTAACTCTGTTTGGTTTGAATTCTGTTGCCAATGTGAACGCTTCCTCCGTACACCTCGTCTGTCCTACGGTGTCCCCGCAGTGTCGCGCTGTGTCCCCACGGTGTCGCGCTGTGTTCCTACTGAGATCGTGATTGATGATGTTCTTGATTTCCAAACTTTTTGCACGTTAAACTTTCAGACTGTAGGTGTTCTGCTGAGCGACACTCCTATCATAACTGAGATGAAAACGACGTCACAGCAGCAGGAGCGCCACCCTTCCCCTGATGATGgcctaaatgtatttgtttttcataTTGAACTcagtgtttttatcattttgtcaTTATTTATCTTTTAGATCTGCATTAAAATTGAGATTTGAGGTGGTGTAAAGTGGGACGATGGAGTCAGAAGTCTCACTAGCCCCTAAAACCAGGACATTCAACACTATATGAGTTAGTTTAACGGTCCAGCATGATGCAATGAGCAATCTGAAAGAAAATCTAAAGGGTGCATGAgcgtaaaatgtattttttttgcagttttgccAGACCTATTTATAGATCTGTTAATAGTTCCCATCAGTTCTGCAGTAGTAAAGTCACCTCTCAGTATTTGATATTGCCATGATATCATAAATATAgaaattgaaataaatttgaagttattattatagttaaagaCACATCATGAatatgtgattttttaaatttttttataagcACCAGCAGTGCCACTATTAGAAACAGAAATCATGACCGAATGCAGTTGAACAGGACTAATTAAACTAATCACTATAGATTTAGGCAAAggaatagtgtgtgtggtgattgTTTTGTCttgaccgagaccacctcttttgggtCTGGATCTATTGAAACATGGTccggtttgtttgcagtgtgaaaacacttattttattaaatgggtTTGGATTTTCAGACCAGCTAACAGGGAGTTAAGGCAAGCTTTTATCCCCCATTTagcaatagaagaagaaaaataagtgGTGCACAATATTTGAAAAATTTGgtattgcaatgtttttttattcgatgaatatatatatatatattgtgatattaaacaatgcagggcctgTGATATCAACAGCCCTGCCCCCACCTGCATACTTTCTCGCGTCAGAGATCCGGACCTACCAAGAGCTGAGTCAGACGATCACTCAAAACCTGTAGAAAACTGCAAAACAGCTATTATTGTCCCATTTATCTGGCattgaagtggtcttttaaaaagcgtttttctgggattaaaaatgtaatttctgcTGTAACTAGATACAGGCCGTCAGCCGGTGAatttacaagcacatgcccagccatgtggaggccatgcggtaACCTTGTGTTTACGCCCACGCCCCTTCCCActcatgcttctcaggcagcagcagcctgtcactcacacagagacagcgctgttcactctacttcttgtgtcaagaattaaaacattgcaacatgacgtgtttgatttaattgcattaGAAGACATTGCACATGGAGATGACGATGCTAAAACGacatatcgtgcagccctacggtgttgtgctgaatccTGACTTCTCTTGGTGTGCAGACACTTCATACTGCAGTATGAGTACAACAGATTATGCTAttattcctgtatctactgtaactgtagattaacccttctttataaacagaataaaataagtcTAAGGAAAGTCTGTTACGCTCATTCTGCTGCAGGACATGcctggcacaacacctggaaagcaAAATGGCATCCTTTCTTATGCagaacagccaatcagatctctTCAGTTTGCTTTCTAAGAAAAGAGATGCTTCTTCAAGGGTTTATTTGGTCAAACCATTTGACCGACTAAATGGTTCTATACCTGCTCACCTGCTTCTTTACACTCCAGAGAGAAGATAAACAGTAAAGCCTGTTTTACTTAtataaagaaccatttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260283 lncRNA downstream 22719 21526159 ~ 21528036 (-) True G191812
TU260257 lncRNA downstream 114302 21430020 ~ 21436453 (-) True npff
TU260224 lncRNA downstream 179976 21303518 ~ 21370779 (-) True G191791
TU260215 lncRNA downstream 271003 21279003 ~ 21279752 (-) True G191787
TU260104 lncRNA downstream 311233 21173472 ~ 21239522 (-) True G191691
TU260302 lncRNA upstream 139265 21709916 ~ 21711285 (-) True G191827
TU260335 lncRNA upstream 262491 21833142 ~ 21833495 (-) True G191858
TU260349 lncRNA upstream 289475 21860126 ~ 21924848 (-) True G191870
TU260360 lncRNA upstream 387190 21957841 ~ 21958432 (-) True G191880
TU260364 lncRNA upstream 395858 21966509 ~ 21966712 (-) True G191884
XM_022682606.1 mRNA downstream 5924 21510924 ~ 21544831 (-) False elmo2
XM_022682608.1 mRNA downstream 5924 21510924 ~ 21544831 (-) False elmo2
XM_022682605.1 mRNA downstream 5924 21510924 ~ 21544831 (-) True elmo2
XM_022682603.1 mRNA downstream 52692 21442288 ~ 21498063 (-) True itga7
XM_022682609.1 mRNA upstream 1716 21572367 ~ 21583063 (-) True LOC111195407
XM_022682610.1 mRNA upstream 1716 21572367 ~ 21583057 (-) False LOC111195407
XM_022682611.1 mRNA upstream 27476 21598127 ~ 21630334 (-) False LOC103033505
XM_007248381.3 mRNA upstream 27476 21598127 ~ 21630334 (-) True LOC103033505
XM_007248384.2 mRNA upstream 76454 21647105 ~ 21663599 (-) True cdk4
XR_002651626.1 other downstream 5924 21510924 ~ 21544831 (-) False elmo2
XR_002651627.1 other downstream 42494 21508052 ~ 21508261 (-) True LOC111195406
TU259248 other downstream 2648498 18897509 ~ 18902257 (-) True LOC103032794
TU259141 other downstream 2787327 18711234 ~ 18763428 (-) False LOC111195399
TU259137 other downstream 2821959 18709030 ~ 18728796 (-) False LOC111195399
TU260340 other upstream 276318 21846969 ~ 21851642 (-) False G191862
TU260341 other upstream 276318 21846969 ~ 21851642 (-) True G191862
XR_002651628.1 other upstream 778696 22349347 ~ 22362457 (-) True alas1
XR_002651631.1 other upstream 1140371 22711022 ~ 22722905 (-) False amhr2
TU260753 other upstream 1215683 22786334 ~ 22788955 (-) False LOC103041653

Expression Profile