RNA id: XM_007248384.2


Basic Information

Item Value
RNA id XM_007248384.2
length 2397
RNA type mRNA
GC content 0.44
exon number 8
gene id cdk4
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21647105 ~ 21663599 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAGGACCGGAAGCATCTCATTTTCACAATGAGTTCAAAGTGAGAAGGGGAGAAAAGTTCGAGAAAGCTGAAAAAGCGTAAAAATATTTGCGTTTTAATCGTTAACGCTAAAAATACCGAAGCGCGCACGCTTAACCGGGTTGGATGGAGCGCGCGGGGCGCGAGGACGCGCAGATGTGATGATTTGGGGTGGTTATTGGGTAATATTGGGGTGATTTGTGGTCAGTCTGGCTGGAGACAGCGTGCTAGTTTGCTTCGCAAACAATACGATGGCTATGACCCAGGAGGGCGGGGTCCAGTATGAACCGGTGGCGGAGATCGGCGGTGGTGCATATGGGACTGTGTATAAGGCTCGGGATACACAGAGTGGTCAGTTTGTGGCCCTGAAGAGTGTCCGTGTTCAGACTGACCAGGAGGGCCTCCCGCTGTCAACAGTTCGAGAAGTGGCCCTGCTGAAGAGACTGGAGCAGTTCGACCATCCAAATATTGTCAAGCTGATGGACGTGTGCGCCACACTGAGAACAGATCAGGAGACAAAAGTTACGCTGGTGTTTGAACACGTGGATCAGGACTTAAAGACGTATCTGGAGAAAGCTCCAGCTCCAGGACTTCCTGTTAGCCGAATTAAGGATTTGATGCAGCAGCTGCTTTGTGGGCTCTCCTTCCTGCACTCTAATCGGGTTCTCCATCGGGACCTGAAGCCTGAGAACATCCTGGTCACTAGCAGGGGGCAGGTCAAACTCGCAGACTTCGGCCTGGCTCGCATTTACAGCTGCCACATGGCACTCACCCCAGTGGTAGTGACGTTATGGTACCGATCTCCAGAGGTCCTGCTCCAGTCCACCTACGCCACACCTGTAGACATCTGGAGCACAGGCTGCATCTTCGCAGAGATGTTCAGACGCAAgcctTTGTTCTGTGGAGAATCAGAAGTGGACCAGCTAACAAAGATTTTTTCTGTTATCGGCTTGCCAAGTGAGGAGGAGTGGCCTACTGACGTCACGCTCTCCCGACGGAACTTCAGCCCCCAAAGcccccagccaatcacagactATGTTCCTGAGCTCCGTGAAGATGGAGCAGACCTTTTATTGaaaatGCTGACTTTTGACCCGTTGAGAAGGATCTCTGCACTGAAGGCTCAGGAGCACCGGTTCTTCTCTGAACACACTGGTAACTCTTAGGACACCCCGACTGAGATCAGTGCGGTTCTGCAGTGGAAATGTTCGTGATGTAATTACCGGTTGCGTCAGTGGGCGGTTTGCTTGCCGGCTGAGTGGGTTCAGTAATCAGATGGAAACCTGGGATGCCAGCAGGTCACGCATCCATTGGACGGCCGACTCTTAAACCTGAATGTTCTGTGTTTGAAACCCTGCTGCGGCGTAATGTTTGTACATGAAGGGTAGACCTTAATtgtttcctctttcttttttttttattttattaataacttaaatatGATCAATCCAGTCCTTTTATTAACATTTGTCTACCAACCGAATCAGCGcacacactgtgctgtccaAAAGTATGTAGACACCCAGCATTTCTGCTGAAATTAAGAAtgttttccagatttttttttttgccttttactGCAGTAGCAACCTTTACCCTTTTAGGATGCAAGAAACACTTGCTGTTGGAACATTTGATTTCATTCAGCCCAACAAACTCAATCTGTGTGTGCCAGCCAACTTATTTTAGAAGCCTGTCCGTATACTTTTGGACACGTAGCGTATGAATATAGTAGCATTCTGGACAGTATGGATGAGTGGATGAATGTAAACGCTAAGCCTCATTAAGATAATCATTTACAGCTCTGCCCATCGGCAGGATACAACTGATTAATAGGCTTTTATCGTTTTTCAAAATTAAAGTCCTCAGTGGTACAACCTGAGCACTCTGTACTGCACGTTTCCTCAGTATCagacattttatttgatttgattttaagcAGCAaccagtttaattttatttttaattttattttgtttaagagCATAGACACCATTCAGTGATTTATAAGTTAATAACGCATTTTACGTAAGTTTAACCGTTAATATATATTCTGGTGGAATTTCCAAGACAGGATTACCTGACTGacaatctttttacattgacttccagtGATTTAGATAATAAGGTCCTGTTTGTCGCTGTTTggagatacaagtttttttttttttttatgtaaataaaccaACCATTACTGAACAACCATTTCAACAACTGTATAAAAAATTTCCAAGCATAAAGGCAAGCTAGTCCAGAGAGGCGTAACGCATAAATCCGTTAAAGCAGAATTCACTGCcgataaataatataatatgtcaaagtgcacaaaatcattcctgtttttattatgtattttatatgacCTTATTTTTATACACC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K02089 CDK4; cyclin-dependent kinase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260283 lncRNA downstream 119069 21526159 ~ 21528036 (-) True G191812
TU260257 lncRNA downstream 210652 21430020 ~ 21436453 (-) True npff
TU260224 lncRNA downstream 276326 21303518 ~ 21370779 (-) True G191791
TU260215 lncRNA downstream 367353 21279003 ~ 21279752 (-) True G191787
TU260104 lncRNA downstream 407583 21173472 ~ 21239522 (-) True G191691
TU260302 lncRNA upstream 46317 21709916 ~ 21711285 (-) True G191827
TU260335 lncRNA upstream 169543 21833142 ~ 21833495 (-) True G191858
TU260349 lncRNA upstream 196527 21860126 ~ 21924848 (-) True G191870
TU260360 lncRNA upstream 294242 21957841 ~ 21958432 (-) True G191880
TU260364 lncRNA upstream 302910 21966509 ~ 21966712 (-) True G191884
XM_022682611.1 mRNA downstream 16771 21598127 ~ 21630334 (-) False LOC103033505
XM_007248381.3 mRNA downstream 16771 21598127 ~ 21630334 (-) True LOC103033505
XM_022682609.1 mRNA downstream 64042 21572367 ~ 21583063 (-) True LOC111195407
XM_022682610.1 mRNA downstream 64048 21572367 ~ 21583057 (-) False LOC111195407
XM_015605612.2 mRNA downstream 76454 21550755 ~ 21570651 (-) False arfgap1
XM_007248436.3 mRNA upstream 341835 22005434 ~ 22012959 (-) True LOC103023479
XM_022682618.1 mRNA upstream 527225 22190824 ~ 22205696 (-) True tmbim6
XM_022682619.1 mRNA upstream 543523 22207122 ~ 22229088 (-) True avil
XM_022682620.1 mRNA upstream 573848 22237447 ~ 22247617 (-) True ctdsp2
XM_007248393.3 mRNA upstream 596060 22259659 ~ 22280175 (-) False LOC103037062
XR_002651626.1 other downstream 102274 21510924 ~ 21544831 (-) False elmo2
XR_002651627.1 other downstream 138844 21508052 ~ 21508261 (-) True LOC111195406
TU259248 other downstream 2744848 18897509 ~ 18902257 (-) True LOC103032794
TU259141 other downstream 2883677 18711234 ~ 18763428 (-) False LOC111195399
TU259137 other downstream 2918309 18709030 ~ 18728796 (-) False LOC111195399
TU260340 other upstream 183370 21846969 ~ 21851642 (-) False G191862
TU260341 other upstream 183370 21846969 ~ 21851642 (-) True G191862
XR_002651628.1 other upstream 685748 22349347 ~ 22362457 (-) True alas1
XR_002651631.1 other upstream 1047423 22711022 ~ 22722905 (-) False amhr2
TU260753 other upstream 1122735 22786334 ~ 22788955 (-) False LOC103041653

Expression Profile