RNA id: XM_007248414.3


Basic Information

Item Value
RNA id XM_007248414.3
length 1443
RNA type mRNA
GC content 0.53
exon number 5
gene id shisa4
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22963708 ~ 22972405 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGTACATCACTGTTTGCCCGCAGGCTGTGTTGCTCGCGCGGCGGCGGCGGGATCTCGCGTGCGCATTGGAACCGGAGCGGATATTTTGGATACAGCGGCGCCGCGCTCTCTCTCCGTACAGATGTAAGGTGCTGTTCTGTTCCCGCCTCTTCTCTCTACTCTCTGCGGCTCCGGTTCAGGTCCCGGTTCGGTCGGTGGTGCGGAGCGGAGATGGCGCTGGCCGCGCTGGCTGTAGTGGCGCTGTGGGCGCTGCTGTCGGTGTGTGACGTGAGTGCTAATGAGGACTGCTTGTGGTATGTGGATAAAAATGGCACCTGGCACAATGGCTTTGACTGCCAACTCATCTCCTTCTGCTGTGGGACCTGCGCCCGGCGCTACTGCTGCCTTAACCCCGCAAAGATGATCACAGAGTCAGTACAGAAGCGCTGCATGCTCCTCCGCCTCAGCCCGTCCACCATTGCTGGAATCGCTTCCTCTATCCTGCTTTTTGTGGCGGCCATTGCCACCATGGTCTGCTGCTTCATGTGCTCCTGCTGCTACCTGTACCAGCGCCACCAGCAGCGGGGCCGATCAACTTACGAAGCTCAGCACATTCCGATGGCCAGCTACCCTGTGGAACCCATGTATGACGTTTATGGAAAACCCATCCGAAACCCGGAGAACCCTGGATATCCGATGGCTCCACAGTACCCTGGTGTGCCCCCGCAGTACCCCATGATGGCACCGGGGCCATACCCTCCATATACTCCTGCTGACCCGGGTTTCAATTTTGGAGCTCCTCCACCATATTCCCCCCCGCAGTATCCGGGCCACTGAGGGGTCGGCCTGTAACGGATCAGAGCTCAGACTGGCATGAGAGACTCTCCTCGAGTCATTAAACTGACCCGACAGATCGTCTTCAgaatctctttatttatttcctatttatttctgtttttttctctggagTGCAGCATGAACGGGCCGGGTCCGCCTGATGGAGTGAGTCCAGGAGTGAGTACCGGGGtgaacacacactcatctcACGAGTCGCTGAGACATTTTACACTCTCCCTGAAGCACAATGACTCCCCCTCCCCTTCCCACTCCACGTCACAGAGCTGACCTTAGTCCGTCCAGAATTTTACTGCTACCGTCCTCCTGCGTCATCATACACGCCCGCTAAACCTCCTTCAGAGGCTCTGGTGTTGGTACCCGTGGGGTGACGGACTGGTTGCTTCTGTTTCTGCTGCCACAGGATCCATTTCACTTGTCTGTTTAAAACTCATAATCCATAGATCATAAAGCATGTTATCTGCAACAGTACAGACTGGAATGTTCtacatataataaaaagtacatataataaaacacactaCCCGTCttattagagtaaaaaaaaacaacaaacactaGGCAACGTTAGATTTGTCTGTTTTTGACCACAAAGGTAAATTAGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260841 lncRNA downstream 899 22961247 ~ 22962809 (-) True G192232
TU260842 lncRNA downstream 899 22961427 ~ 22962809 (-) False G192232
TU260847 lncRNA downstream 12382 22951007 ~ 22951326 (-) True G192237
TU260845 lncRNA downstream 24554 22938921 ~ 22939154 (-) True G192235
TU260751 lncRNA downstream 174753 22786334 ~ 22788955 (-) False LOC103041653
TU260851 lncRNA upstream 58247 23030652 ~ 23031070 (-) True G192240
XR_002651658.1 lncRNA upstream 126433 23098838 ~ 23100988 (-) True LOC111195460
TU260909 lncRNA upstream 132703 23105108 ~ 23105627 (-) True G192288
TU260914 lncRNA upstream 182177 23154582 ~ 23155042 (-) True G192293
TU260961 lncRNA upstream 243185 23215590 ~ 23223369 (-) True G192335
XM_007248413.3 mRNA downstream 4662 22951724 ~ 22959046 (-) True lmod1
XM_007248412.3 mRNA downstream 18699 22940330 ~ 22945009 (-) False timm17a
XM_022682656.1 mRNA downstream 18991 22940330 ~ 22944717 (-) True timm17a
XM_022682654.1 mRNA downstream 38040 22850141 ~ 22925668 (-) False LOC103025695
XM_022682653.1 mRNA downstream 38040 22850141 ~ 22925668 (-) True LOC103025695
XM_007248415.3 mRNA upstream 1799 22974204 ~ 22993650 (-) True ipo9
XM_022682657.1 mRNA upstream 23689 22996094 ~ 23028601 (-) True LOC103025998
XM_007248416.3 mRNA upstream 61070 23033475 ~ 23036792 (-) True rabif
XM_022682660.1 mRNA upstream 90762 23063167 ~ 23072202 (-) True LOC103044418
XM_022682659.1 mRNA upstream 90762 23063167 ~ 23072197 (-) False LOC103044418
TU260753 other downstream 174753 22786334 ~ 22788955 (-) False LOC103041653
XR_002651631.1 other downstream 240803 22711022 ~ 22722905 (-) False amhr2
XR_002651628.1 other downstream 601251 22349347 ~ 22362457 (-) True alas1
TU260340 other downstream 1112066 21846969 ~ 21851642 (-) False G191862
TU260862 other upstream 82228 23054633 ~ 23058805 (-) True G192251
TU261664 other upstream 2239270 25211675 ~ 25217550 (-) True G192815
TU261852 other upstream 2902505 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other upstream 2902505 25874910 ~ 25878653 (-) True LOC111195415
TU262021 other upstream 4059258 27031663 ~ 27033089 (-) True G193097

Expression Profile