RNA id: XM_007248421.3


Basic Information

Item Value
RNA id XM_007248421.3
length 1861
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC103045443
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 23074119 ~ 23082128 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCAGTGTACAGTGTACACACCCGAGCTGCAGCAGCAAGTAACTTACAGTACACTAGCTAATCTAtattagctaaattagctagtATTAGCTAGTTAAATAGTTAGTTTCGTATATTTCCGGTTGTTTAGAAAGATTTAGCCGTCATGTCCTACGCAATGACCACCACTGTAGCAGTGACAGCCGGGGTGCTGGTGGTCTCCACTGTGGCAGTGTTGGGGTATTTTTTTCTAGGCAGGAAGAAGAAGGCTCCGATTACTTTGGTCGACCCGTCAGAAAAATACAAGCTGAGACTCATCGATAAAGAGGTTATTAGCCACGATACACGCaaatttcgctttgccctgccGAGCCCTGAGCACATCCTGGGCCTGCCTGTAGGAAAACATGTCTACCTCTCTGCTCGGATCGATGGAAACCTCGTTGTCCGTCCGTACACTCCAGTTTCCAGCGACGACGACAAGGGATGTGTTGATCTGGTGGTGAAGatttacttcaaGAACGTGAACCCAAAGTTTCCTGAGGGAGGAAAGATGTCTCAGTACCTGGAGAGCCTGAAGCTGGGAgatgttgtggacttcaggggTCCAGGAGGCCTGCTGGAGTATAAGGGCAATGGGCAGGTTGCTGTACAGGCTGATAAGAAGTCTGAACCCGAGATGAAGAAGGCCGCTACGCTGGGTCTGATCGCTGGCGGGACAGgCATCACCCCAATGCTGCAGCTGATCCGAGACATCATGAAGAACCCAAGTGATAAAACCACCTGCAGCCTGCTGTTCGCCAACCAGACTGAAAAGGACATTCTGCTGCGGGACGAGCTGGAGGAGATCCAGGCCAGACACCCAGAGAAGTTTAAGCTGTGGTTTACTGTGGACCGAGCCCCGGAAGACTGGGAGTATAGTGAAGGCTTCATCAGCGCCAGCATGATCCAGGAGCACCTCCCTCCACCCAGTGACGAGTGCATTATCCTGATGTGCGGCCCGCCTCCCATGATCCAGTTCGCCTGTAACCCCAACTTGGACAAGCTGGGCTACGGGCAGAGCCAGCGCTTTACCTACTAGTCCTATCGACCAATGCTCCTGAGTTTGGATTGGACTGATTAAATGAAACCGCCCCAAAGCTGACAGCACCTCATCAAAACCACCAAAGCCTCTGCAGACGCACAAGTCTCTCCTCAGGATAAGCAGATCAGTCTTAGAAACCACCACAGACATGgtcctaatcctaatcctaaatCCTAAATCAGACTACTCTTAGATGCTGTGTGAGTACCAGCTCTGGTACTTCAGCCTAAACCAATCACTGCTGATCTGCTAAACTTGTCCAAGTGCCGCCCTGGCGAGAGACCGAACCGTGCCGTTAAAAATGACTGTGTACATAACTGTGTAcatatagaccactgaagttgtGTTGTCATTTTGTAGTAAACACTCCAGGTCCGATGTTCATTTTCAGTGGCAGAAATGAATGGAGTTCGGGGTTAGAGACAAATGTGGGCATACTGAGGATTTCAAAATGAAGCACAACTTCATTGGTCTGttggttttgcttttttgctCAGGTGTTATTTTGCTAAATGAGTATTTACCATTAGTAACTGTGTGCTGAAGCACTAATACACTTAAAACCTTTGATGTGCACTTGTTGACATTGCTGTTTGACAGCCAATGAAGCTGGATCTCACATGTATGGCTGTATCACTGTGTTATAATGTAACAGTGTAAtgaaatatatagtatatgtatTTTGTTCTGAAGTGCATGCAGCTCTCACTCTATATATTTTGAAGTGTTCAATGTAATGTGCTTTTGTTTGGCAAAATATAATCTATTTTATGAACATAAAGAGCTTGTTACAGTgca

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00326 E1.6.2.2; cytochrome-b5 reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260851 lncRNA downstream 43049 23030652 ~ 23031070 (-) True G192240
TU260841 lncRNA downstream 111310 22961247 ~ 22962809 (-) True G192232
TU260842 lncRNA downstream 111310 22961427 ~ 22962809 (-) False G192232
TU260847 lncRNA downstream 122793 22951007 ~ 22951326 (-) True G192237
TU260845 lncRNA downstream 134965 22938921 ~ 22939154 (-) True G192235
XR_002651658.1 lncRNA upstream 16710 23098838 ~ 23100988 (-) True LOC111195460
TU260909 lncRNA upstream 22980 23105108 ~ 23105627 (-) True G192288
TU260914 lncRNA upstream 72454 23154582 ~ 23155042 (-) True G192293
TU260961 lncRNA upstream 133462 23215590 ~ 23223369 (-) True G192335
TU260962 lncRNA upstream 134048 23216176 ~ 23224603 (-) True G192336
XM_022682660.1 mRNA downstream 1917 23063167 ~ 23072202 (-) True LOC103044418
XM_022682659.1 mRNA downstream 1922 23063167 ~ 23072197 (-) False LOC103044418
XM_022682658.1 mRNA downstream 1923 23063167 ~ 23072196 (-) False LOC103044418
XM_007248416.3 mRNA downstream 37327 23033475 ~ 23036792 (-) True rabif
XM_022682657.1 mRNA downstream 45518 22996094 ~ 23028601 (-) True LOC103025998
XM_007248420.3 mRNA upstream 5398 23087526 ~ 23098564 (-) True rnpep
XM_015605622.2 mRNA upstream 5398 23087526 ~ 23098560 (-) False rnpep
XM_022682663.1 mRNA upstream 22126 23104254 ~ 23144408 (-) False c22h1orf106
XM_022682664.1 mRNA upstream 22126 23104254 ~ 23129686 (-) True c22h1orf106
XM_022682662.1 mRNA upstream 22126 23104254 ~ 23129680 (-) False c22h1orf106
TU260862 other downstream 15314 23054633 ~ 23058805 (-) True G192251
TU260753 other downstream 285164 22786334 ~ 22788955 (-) False LOC103041653
XR_002651631.1 other downstream 351214 22711022 ~ 22722905 (-) False amhr2
XR_002651628.1 other downstream 711662 22349347 ~ 22362457 (-) True alas1
TU260341 other downstream 1222477 21846969 ~ 21851642 (-) True G191862
TU261664 other upstream 2129547 25211675 ~ 25217550 (-) True G192815
TU261852 other upstream 2792782 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other upstream 2792782 25874910 ~ 25878653 (-) True LOC111195415
TU262021 other upstream 3949535 27031663 ~ 27033089 (-) True G193097
TU262199 other upstream 4342914 27425042 ~ 27476869 (-) False LOC103046149

Expression Profile