RNA id: XM_007251413.3


Basic Information

Item Value
RNA id XM_007251413.3
length 3543
RNA type mRNA
GC content 0.45
exon number 3
gene id ap5b1
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5765449 ~ 5771297 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCATGTGACATTTTCTGAACACGTGACATGAACATATCTGGAGGAGCTCCAGGGGAAAGAATGTACTCCTCATCTTTCATACACTGGTAGCTGAACTGTGTGATCTTCATCATGACGACCGGGAGCTCTTGGGATGAAagaatttctgcttttttattgaGCCCCTCACAGTTTTTGTCCCGCACCACCCCCGAAACCTTTCTATCAGAGCTTCTGGATGAACTGAGGGATGACAAGGCCAATGACTACAAGAAGGTACTCCTATTATCTGCTTTACTGGAGCATCCTACAGTCCTCTGCCCTACGGCCTCAGCGGGAGAGGGGACAGCGCAGGAGCTCATATCAATCCTCGCCTTAACTCCACAGAAATCCATCAGTCTGAAATGTCACATTTTGCTGGCTGTTACCAACGTCTTAATATCTACATCTTGTTTGGCCAGTCGAAAGAAGGTAGCAGAGGAATACCTGGACCTGCTGTTTAAAACGATTCAGGACACAAATGATAACGCAGGTGGGCTGGCTCTTCATCCCATCAGATCCACGGCCTGTGAGTGTCTGAGAGAGATGGAGTCCTGCAACCCTGGCCTCCTGTCCCAGAAGTTGGAAGCCTTGTACTACCTAAAGCAACAGGAAAACACTGTTCTCCATCAGTCGTACTCTATGCTGTATACGCAGAGTCTCAAGAATGCCATTCGTCTCCTGACTCAAGAAAAAGATGTGGATAACGCAAAGCTTAAGAGCACCTTAACTGGAAACGAAGGCTTTTTGTGGAAGACGATAGAATCCTCGATGTATACGCTGCCATTCAGCACAATGACGCAGGTTCCACAGCTTCCATCTATACTGGATTGCAAAGAGCTGAAGTCTATCTTGTCTTTGCTCTTGGAGGAATCTTACCTGATGACTCCCGTCTCCCAGGCCAGTTTGCTTCGAGGATTGGTAGAGATCGTGGCCATGGTTCCAGCCATCTCCCCGGCCATTTTCAAATCTCAACTCTTGCGCCTCTTTGGGACAGCCGAGGTTGAGTTGATGCATGCTACACTGTTGATGAAAGGCACATTTACAGATAGCCTCTTCACAGCCGAGGACGAGCACTTCTTACTCAAGCGCCTTGTTGGCATGGCACAACATCCACTTCTAAGAACTCCTGAGAAACTGTTCTACATGAACTGCATTCTACATTTCCCTGAGAACAGACCCATCTCCTGCCCTGGAGAAGAATGCTTACCTGTGCTGGTCACGCCTCAGCTCACATTGTCTCTCCTACCTACCGTGTTTAATGACAGTGCCACCATGCTTTGCAGACTAAACCTACTATGCCTGGTCCACCTAGAGGCGGACGAAGAAGAGGAGGGGAAAGGCCTGGCCTACTTGTTTGACCATCTGGTGGCTATGCTCAAAATCGTAGACAATCAGGGGAGCAGAGAGATGGTAGTGACCTCTTTTAAGGcaatctttatttttctcagGCACTTTAATCACATGGAGAAGCTGTCTGAGAAGATGGTCAACAGCTTATGCGACTTGTATTCCAGGCACTGTCGCCTTGCTCCTAACCTGATCAATCTTGCTGACCGAATCCAGGAAAGCTTAGAAGAGTCCCTCTGGTCAGTGCATTTGTTAGAAGCACTTCAAAAGTGTGTGGTGGCGATGCCTCCATTACAGCTGACCTTACAGAATCTGAGTTGGCACCTTAAAATCTTGGCACGAGTAGCGCAAGAGAGCCAGATCGTCCAGAGGGACACAATCTGCCTCCTTCTCAATGTCCTCATCAATTCAAATCTCTGTGAAAGGGGCAACTGGAAGGTCGGCAATGCAATTCTTGCGGTTTGCCGCCAATTGCTTCAGCATCCCACCTTGAATGAGATGTTTATTGAACTGGCAGACCTTCTGCAGTACGTGACCAAACATTACGAGGACACAGACATTCAAGACCATGCACGGTTCTACTACACCCTGCTTACCAACCTGTCTTGGGAAAAACTAGGGGGTGTCCTCGCCATAGGTCCAGAAGGAGGGCAGGCTAAGATTCGGTCGTTGTCAGCCATTGTGGCTGAAAGCGATGGGCTCACAAGCTGCTTGACTGTTCATCAGACTGAGGGATGCGTCGTGCAGCTGACCAAAATCCATGAGCACGACTTTCAGAGTGCAAACACCAGTACAAACACTTTAGAGACTCTGGAAAACCTGGAGACTGTGGGTGGGCAGATTAATTTGTCTACCAAGGTCTACCAAGAGCAGTTCAAAACCCCAGGCTTTGCATCCGAGATCACCTTACGGTATAACCTGACTCATGCTAATGTGAAAGATCCAAGGTTTGACAGGATGTTCACAATTTGCCTGCACTTTGACTTGAACGATTCTCACTACGCAGACGTCAATGATATCTATGTCCCTTGCCTCTTCAGAGACAGGAAACCTCCACAAGTTAGCCTGAAGTTAAAGCCGTATCAGCCATACCCAACAAGTCTACAGTTGAGGGCCATATTCACCACAGAAGATGGCCTGTCTTGGCACACTCGACTACCTGACGTACAAGTATCATTTCCTGAAATATTCCTCCCCATACCTGTGCCACTGAGCACGTCACATGAGTTCAAGGAGGACGTGTTTGACCATATTTGGAATGCTACATCCTCCGGTGATCCTAGCACTTCAGCGACTAGCCTGTTTTGTTTTAAGACCGGCAGCGACACATTAGCAGATTTGATAGAGACTCACTTTAAAGGTTACCTGATAACAAGGTCACAAGATCTCTCCAGTGTATGGaaagtcttatttttccttCCACCCCAGTTTCATATTCTGTTAATGATCAGACAGGCTGAGGATGCTGTTCAGGTCAGCATTGCGACGGACAACTGGGAGCTGTTACCACATGTCAACTCTTACCTACAAAACATAACTGTCAactgcaacaagacaatgaccggATTAACGTTAAATCCTCAAAATGAATTGTAGCGTAGTGTCCACCAAATGAGGTCCTTGTGTAACCTGGCAGcacagaccaccatgcccatttTAAACTCTTAAGAGCCGGTTTACCAGAGGGGGATTAATACTACAGagtattttgaatggagattttccaataaaaaaagaagatataGTCaaaaactaggcttaatccctgtcttgGCAACTAATCCTAGAGGGAGTCCTGCagttattcttttcttttttttattggagaaTCTCCATTCTGAATGCTGTGTAGTCTAGGACTCTAGTCAAGGCTCTAACCTCTAGAAAGACTTGTTCATTCACTCAGTTCAAGTtcagtacagtaaaaaaaaaaaaaataaagagacaaaactattaaaaatattgtaacattatagccatgtgtttgattttaatatattttgattttatcatgtttcataTCGGTTTAATTGCACTCACACtttatgtttttgatgttttttgtaaCGTCTGTCATAAACCTTGTGCTAATTGTCAAATTCAGCCAAATACAAAGTACAGTGTACAGTTGATTAtacaatatgtaaaataaagtcATAACTGATGTAATCCTTA

Function

GO: NA

KEGG:

id description
K19022 AP5B1; AP-5 complex subunit beta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254229 lncRNA upstream 1958 5746898 ~ 5763491 (+) True G187487
TU254231 lncRNA upstream 1958 5752167 ~ 5763491 (+) False G187487
TU254230 lncRNA upstream 16944 5701793 ~ 5748505 (+) False G187487
TU254226 lncRNA upstream 124393 5640822 ~ 5641056 (+) True G187484
TU254209 lncRNA upstream 263573 5499104 ~ 5501876 (+) True G187477
TU254245 lncRNA downstream 25883 5797180 ~ 5798979 (+) False p3h1
TU254361 lncRNA downstream 114505 5885802 ~ 5886002 (+) True G187583
TU254362 lncRNA downstream 117536 5888833 ~ 5899725 (+) True G187584
TU254390 lncRNA downstream 333895 6105192 ~ 6178630 (+) True G187610
TU254445 lncRNA downstream 529555 6300852 ~ 6302587 (+) True G187640
XM_022682302.1 mRNA upstream 34105 5725343 ~ 5731344 (+) True wnt4
XM_007251419.3 mRNA upstream 247884 5508308 ~ 5517565 (+) False fbxo2
XM_022682301.1 mRNA upstream 247884 5508394 ~ 5517565 (+) False fbxo2
XM_022682300.1 mRNA upstream 247884 5511811 ~ 5517565 (+) True fbxo2
XM_022682298.1 mRNA upstream 279036 5472482 ~ 5486413 (+) True LOC103021734
XM_022682303.1 mRNA downstream 8594 5779891 ~ 5798591 (+) True p3h1
XM_007251410.3 mRNA downstream 46687 5817984 ~ 5835626 (+) False cldn19
XM_007251411.3 mRNA downstream 46689 5817986 ~ 5835626 (+) True cldn19
XM_007251407.3 mRNA downstream 470730 6242027 ~ 6258457 (+) True LOC103043936
XM_022682305.1 mRNA downstream 505502 6276799 ~ 6288068 (+) True LOC103043630
trnae-cuc_2 other upstream 975402 4789976 ~ 4790047 (+) True trnae-cuc_2
XR_002651654.1 other upstream 1841787 3923452 ~ 3923662 (+) True LOC111195456
TU253515 other upstream 2370606 3392387 ~ 3394843 (+) True G186978
TU253378 other upstream 2763434 2980497 ~ 3002015 (+) True G186880
XR_002651586.1 other upstream 5227233 510575 ~ 538216 (+) True cers5
XR_002651591.1 other downstream 375388 6146685 ~ 6147519 (+) True LOC111195362
TU254736 other downstream 1321468 7092765 ~ 7098669 (+) False LOC103029365
trnaq-uug_4 other downstream 1420857 7192154 ~ 7192226 (+) True trnaq-uug_4
TU255026 other downstream 2341193 8112490 ~ 8113242 (+) False LOC111195452
XR_002651599.1 other downstream 2485501 8256798 ~ 8271689 (+) False agtrap

Expression Profile