RNA id: XM_007251508.3


Basic Information

Item Value
RNA id XM_007251508.3
length 2268
RNA type mRNA
GC content 0.52
exon number 13
gene id smarcd1
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 475395 ~ 492764 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTATAGGCGGAGCTCCGGCCGGTGGAGAGGAGAAGATGGCGGCGCGTGGAGGTTTTCAGTCCGGGGCGCCTGGAGCTGGAGGAGCCGGCGGAGGAGCAGGTGGAGGCGGCGGCGGTGGAGCTGGAGGAGGGGGTGGAGGAATGGGACCTGGACCACCAGTACCGGGCGCTGGGCCGGGCATGGGCCCAGGCACGCCGACAGGGAGGATGGGACCCGCAGGCGCGCAGAATCACCTGTACCGCTCCCCGATGGCGGGGCCCGGTTACCCGAGACCAGGGATGCCGCCTGCTAATCGTATGACCCCTCAGGGCCCGTCCATGGGGCCTCCAGGTTACGGTGCCAGCCCCGTGTCCCGCCCGGGCATGCCGGTCATGGATCCCTCCCGCAAGAGACCCGCCCCAGCACAGATCCAGCAGGTCCAGCAGCAGAACCGCAACCAACAtgccaagaagaagaagatggcTGATAAAATTCTACCTCAGAGAatcagAGAGCTGGTCCCGGAGTCTCAGGCTTATATGGATCTGTTGGCGTTTGAGAGGAAGTTGGATCAGACCATTATGCGGAAGAGACTCGACATCCAGGAGGCGCTAAAGAGACCCATCAAGcaaAAGCGAAAGCTGCGCATTTTTATCTCCAACACTTTCAACCCTGCCAAGCCTGACGCTGAGGACGGTGAGGGGACCGTAGCATCGTGGGAGCTGCGGGTGGAGGGCAGGCTGTTGGAGGATACTGCTGTCTCCAAATACGAGGCAACCAAGCAGAAGAGGAAGTTCTCCTCGTTCTTCAAGTCTTTAGTGATCGAGTTGGATAAAGATCTTTATGGGCCGGACAATCATTTGGTAGAGTGGCACAGAACACCCACTACTCAGGAGACCGATGGCTTCCAGGTGAAACGGCCGGGAGACGTGGGCGTGCGCTGTACCGTCCTCCTCATGCTCGACTACCAGCCTCCTCAGTTTAAGCTGGACCCCAGGCTGGCCCGCATGTTGGGCATCCACACCCAGACCCGGCCGGTCATCATCCAGGCTCTGTGGCAGTATGTAAAGACCCACAAACTACAGGACCCCCACGAGCGCGAGTTCATCAACTGTGACAAGTACCTCCAGCAGATCTTTGAGACCCAGAGGATGAAGTTCTCTGAGATCCCTCAGCGTCTGCACGCTCTACTGATGCCTCCTGAGCCCATCATCATTAACCATGTGATCAGCGTGGACCCGAATGATCAGAAGAAGACGGCCTGCTATGATATAGATGTGGAGGTGGACGACACCCTGAAGACCCAGATGAACTCCTTCCTGCTGTCCACCGCCAGTCAGCAGGAGATCGCAGGCTTAGATAACAAGATCCACGAGACCATCGAAACCATCAACCAGCTGAAGACCCAGCGGGAGTTCATGCTGAGCTTCGCCCGCGATCCTCAAGGGTTCATCAATGACTGGCTGCAGTCGCAGTGCAGAGACCTGAAGACGATGACCGATGTGGTTGGAAACccagaagaagagagaagagctGAGTTCTACTTCCAACCGTGGGCTCAAGAAGCTGTGTGTCGCTACTTCTACTCCAAGgtccAGCAGAGAAGACAGGAGCTGGAGCAGGCCTTGGGCATCAGGAACACTTAAGCAGAAACAGGAGGACCAAAGGCAGAAGAGGCTGCTGGGTAGTGGTGTTTGTTCCAGTGCTGATAAACTGGGCTGCTGTCTCCCAGTTACTCCAGTTACTAATCAGACACACAGAcgtttataaaaggtttattaGCCTGTATTCTTAGTGTAGCAGGTAGGAGGGCATGCTAGCTCTTCTCCAGCTGTTTAAGGATGTTCTGATGTTCTGACTGATATGATTTGGTGCCCCTTTATTACCTTAAACTCTTTGAATATGTTGACCTAATTCTCTAAAAATCGTAAAAATTCACCTTTTAGAAAAAGAGAGTTAAAGCTGTATCCTCCTCCTGTGTTGAGCTGctttaatcacttttttgtaAATGCAGTTACAACAGCTACAGTTTATAGAAAAATGGGAATAAGATacgaaaataaaatgatataataaAGTGTTAGAGGAGATAATTGATAATTGTTGCTAAATTGGGCAGTTTTGGAGAAACTGAATGCAGAAGCACACATTTTCAAGCAAGGACAGTTTTAGCCAGAAGCCGCCGGTCGTGATCATTGTGTGTTACCTCAGTACTCAAAGCCTCGATTTCCTCTAGTAACATAAGAACGTTGGATGAggtttgttaaaaataaaagctgattTATACTA

Function

GO: NA

KEGG:

id description
K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252694 lncRNA upstream 51584 422903 ~ 423811 (+) True G186375
TU252687 lncRNA upstream 134577 313960 ~ 340818 (+) True G186368
TU252548 lncRNA upstream 181333 293455 ~ 294062 (+) True G186279
TU252524 lncRNA upstream 221365 221116 ~ 254030 (+) True G186264
TU252495 lncRNA upstream 296617 177894 ~ 178778 (+) True G186241
TU252714 lncRNA downstream 2940 495704 ~ 498408 (+) True G186385
TU252734 lncRNA downstream 66188 558952 ~ 563539 (+) True G186401
TU252737 lncRNA downstream 66635 559399 ~ 561512 (+) True G186402
TU252733 lncRNA downstream 68990 561754 ~ 563539 (+) False G186401
TU252750 lncRNA downstream 122554 615318 ~ 626377 (+) True G186409
XM_022682179.1 mRNA upstream 3351 470063 ~ 472044 (+) True LOC111195351
XM_022682176.1 mRNA upstream 17986 442464 ~ 457409 (+) True lactbl1
XM_022682177.1 mRNA upstream 17986 442464 ~ 457409 (+) False lactbl1
XM_007237534.3 mRNA upstream 197212 269750 ~ 278183 (+) True LOC103047032
XM_007251509.3 mRNA downstream 2309 495073 ~ 505040 (+) True gpd1
XM_022682180.1 mRNA downstream 17823 510587 ~ 538216 (+) False cers5
XM_007251504.2 mRNA downstream 48566 541330 ~ 543530 (+) True bcdin3d
XM_022682184.1 mRNA downstream 76419 569183 ~ 577902 (+) True LOC103029902
XM_007251499.3 mRNA downstream 90034 582798 ~ 585804 (+) True ccdc51
TU252478 other upstream 360308 107396 ~ 115087 (+) True G186231
XR_002651586.1 other downstream 17811 510575 ~ 538216 (+) True cers5
TU253378 other downstream 2487733 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 2899623 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 3430688 3923452 ~ 3923662 (+) True LOC111195456
trnae-cuc_2 other downstream 4297212 4789976 ~ 4790047 (+) True trnae-cuc_2

Expression Profile