RNA id: XM_022682811.1


Basic Information

Item Value
RNA id XM_022682811.1
length 3364
RNA type mRNA
GC content 0.52
exon number 8
gene id prickle2
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 31929726 ~ 32080712 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACAGGTTTGTTTCATTAGGGAGTGAGTGAACGAGCGGCTCGGCTCTGGATGTGTCCCGCTCGTCCCGTGGAGGAATTCGTTGTTTAAAGCCAAGCTTAAAAATTCAGCTCAGCCGGAGGGAAGGAAGTGAAAGATCTGTCTGCACTGTAAGTGTCCTCGTGAGGATCATGTTGTGACGGTCATGCCTCTGGAGATGGAGAAGACCGTGACCAAGCTGATGTACGACTTTCAGAGGAACTCCACGTCTGACGATGACTCGGGCTGCGCTCTGGAGGAGTACGCCTGGGTGCCTCCCGGCCTCAAACCTGAACAGGTGCATCAGTATTACAGCTCCATCCCAGAGGACAAGGTACCATATGTGAACAGCCCTGGAGAGAAACACCGTATCAAGCAGCTCCTGCACCAGCTACCCCCCCACGACAATGAGGTGCGGTACTGTAACTCTCTGGACGATGAGGAGAAGAGGGAGCTGAAGCTGTTCAGTAatcagaggaagagagagaaccTGGGCCGAGGAAACGTCCGCCCGTTCCCCGTCACCATGACCGGAGCCATCTGTGAACAGTGCGGTGGTCAAATTAACGGTGGTGACATTGCCGTCTTCGCGTCTCGGGCGGGTCACGGCGTGTGTTGGCATCCTCAGTGTTTTGTGTGCAGTATGTGTGATGAGCTGCTGGTGGACCTCATCTACTTCTACCACGACGGGAAGATCTACTGTGGCCGACATCACGCCGAGAGGCTTAAACCCCGCTGCTCGGCCTGCGACGAGATCATCCTAGCAGACGAGTGCACGGAAGCAGAAGGCAGGCACTGGCACATGAAGCACTTCTGCTGTTTTGAGTGCGAGACGGTCTTGGGGGGTCAGCGCTACATCATGAAGGAGGGCCGGCCATATTGCTGCAGCTGTTTCGAGTCGCTCTACGCGGAATACTGCGACTCCTGTGGCGAACACATTGGTATTGACCAAGGCCAGATGACTTATGACGGTCAGCACTGGCATGCCACCGAGTCCTGCTTTTGCTGCGCCCGCTGCAAGAAGTCCCTCCTTGGTCGTCCGTTCCTGCCCAAACAGGGCCAGATCTTCTGCTCGCGGGCATGCAGCGTCGGGGAGGATGCCAATGGTTCAGACTCCTCTGATTCAGCGTTCCAGAACGCCCGTACCCGCGAGGCCCGCCGGAGCAGCTCCAAATCTAGCAAGACCAGCTgcagtggaggtggtggaggaggaggaggaggaggaggaagtggTGGGAAGAGCTCTACTGCCCGCTATTCTACCGACGTGGACCCTCTGTCCCTACAGATGGACCTCCTGAGTCTGTCTAGTCAAACCCCCAGCCTGTCCCGAGATCCGCCCTCCTGGAAGAACCAGAACGAAATGTATGGCTACGAAAGCCGCAATGAACCCTCCCCCACCCCGCTCCAACTGCTGAGTCAGTGCAACATCCGGACATCCTATTCCCCCAACCCTTCCCCCGGGCACCCTCAGGACAACCGGCCTAAAGAGCTGGCACCACCCAAGAAACCATCTATATCTGCCCTGAAGGGGCATTCCTTTAACGAGAACTGGTTCCAGCCAGAGACAGAAGACTATTACCCACCCAAACTGAAGCCGCAGGCTAGCTTTAACGAGTTGCCGGCCAATGGCTTTATGGACAAACGCTCTATCAGCTTGCATGTGTTCCAGAGGGAAAGGGAACGGGATGTAGGACCACAGGTGGGTCGCAGCAGGAACCCTATCAGCGCACTTAACTTCAGCGAACAGCTCACACCACTGGAGCAAACACCACGGGGTTCCATGGAGTCACTGGCGTTATCCAATGCTACAGGTACTTCTGCAGATGGTGGTGGCAAGAGACAGGAGCACCTTTCTCGTTTCTCCATGCCAGACCTCAGCAAGGACTCTGGCATGAATGTCTCTGAAAAGAGCAACATGGGAACTCTTAACTCTTCTGTCCAGTTCCACAGCTCAGAGTCTCTCCGCAGCCTCAACACTGGTCAGCCTTACCTGGAGATGGATCCACCTGTGCAAGTGAAGTACCCGCTACCCTACACACAGGAACTACCTGGAATGACCGCCCTGCCACCTGGCTTCACctatcaagaggaagacaggGCAAGTTTGGCTCGGAATTCTAACAGTGCCCGCCTACCACCCATGAGCGAACGGACTCACAGACGTGCTGCTGATACGTCGCACCTGGAGGAGCCGCGAAGAAAGCACCACTATCATCGCTCGCGCCGTTCAAGACGTTCCCGATCTGAAAATGCCCTGAACCTGGCAGCCGAGAGGCGCCCGGCATTTCCAGAACGATCGCAGCCACGAGTCCGTGAGGATTATGATAGATTCCCGCCTCCACGTGGACCGAGAGACTCTTTGGATGCCCGGTCAAGACAGCAGTCCTTCAGGCCGTGCCCTCGGACAACTTCAGACCTCACGCTCCAGAACCCCACACCACGTCGCCACCTGGGCCAGTACGGCTGGGACCAGTATGATTACGACGACGACTGGTGCTCCACCTGCTCTTCTTCGTCCGAGTCTGAGGACGAAGGCTACTTCTTGGGAGAGCCTATTCCCAAGCCGGTACACTTGAGGTACATGAACAGTGAGGACTTGCTGCACAAGTACAACACTTCCGGACTTACAGGATCTGGGCATTTGGGCAGCCGAGGACAGTTACACACTCGCAAGCGCAGGAAAAGCAAGAACTGCATTATATCCTAATACCGAGCCCAGAGGGACTACATTTCTTGCACAATAATAAGAATTCACCTCTTCCCCTTCCAACACTTCCCCAACTTTCCCAATCAAGTATTGTGAGGTTGTTAATGAGTGATCTGCAGTAATTCCAGTAGTGTCGCATTGCACATGCTTCTGCatggttttcttcttctttgatATCTGCAAATAATCCCATGAGTACACTAGTGCATCCAAAATCCGAGATACCAAGCTTACCACCCCCCACACCCCACCCCTCTGTATTGCGGAAGCCAATGTGCAAGCAGTTGTGCTTCATTTAACCTGTTCATAGCCAGCACAGTATGAATTTTGAGTATGGTGCCGCTTTTTACTTTCattgcagtgtgtttctattACGGTTAACagtttattcagtaactacaaggtgtatattaataaaagaacaaattaataaattgttCACTAAATTAAAGatgtaaagtaaataaaatgtaaaaatgttgtaaaaatgaTGTatcacatatttttatattttgtattaatagAAGCAATTATGAATTGAGTATAATGTAGAGAGTATAATGACTAGGAACGCATGCACGTTAATTCgctttttgttttgtcttgtatTTGAGATTAAAAGAGTATTGCGATGAGCA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263390 lncRNA downstream 27654 31901808 ~ 31902072 (-) True G194105
XR_002651582.1 lncRNA downstream 29736 31894502 ~ 31899990 (-) True LOC111195341
TU263404 lncRNA downstream 31342 31897591 ~ 31898384 (-) False LOC111195341
TU263316 lncRNA downstream 227474 31698840 ~ 31702252 (-) True G194046
TU263328 lncRNA downstream 231956 31696272 ~ 31697770 (-) True G194055
TU263444 lncRNA upstream 64406 32081015 ~ 32081371 (-) True G194153
TU263433 lncRNA upstream 64899 32081508 ~ 32083630 (-) True G194142
TU263567 lncRNA upstream 313717 32330326 ~ 32334659 (-) True G194234
TU263578 lncRNA upstream 465322 32481931 ~ 32482201 (-) True G194244
XM_022682808.1 mRNA downstream 21921 31904235 ~ 31907805 (-) True LOC111195428
XM_022682807.1 mRNA downstream 84735 31841108 ~ 31844991 (-) True psmd6
XM_007228710.3 mRNA downstream 144706 31778357 ~ 31785020 (-) True thoc7
XM_015602562.2 mRNA downstream 182556 31739871 ~ 31747170 (-) True LOC107197084
XM_022682800.1 mRNA downstream 275516 31481899 ~ 31654210 (-) False cadps
XM_022682812.1 mRNA upstream 82857 32099466 ~ 32196761 (-) True adamts9
XM_007256431.3 mRNA upstream 263193 32279802 ~ 32481483 (-) True magi1
XM_022682817.1 mRNA upstream 263193 32279802 ~ 32481482 (-) False magi1
XM_022682814.1 mRNA upstream 263193 32279802 ~ 32481482 (-) False magi1
XM_022682815.1 mRNA upstream 263193 32279802 ~ 32481482 (-) False magi1
trnae-cuc_20 other downstream 754848 31174807 ~ 31174878 (-) True trnae-cuc_20
TU263184 other downstream 757257 31170339 ~ 31172469 (-) False LOC103037496
TU263040 other downstream 1098780 30809794 ~ 30830946 (-) True spcs1
TU263041 other downstream 1098780 30809794 ~ 30830946 (-) False spcs1
TU262902 other downstream 1749600 30165761 ~ 30180126 (-) True G193737

Expression Profile