RNA id: XM_015605466.2


Basic Information

Item Value
RNA id XM_015605466.2
length 1610
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC103046766
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27296666 ~ 27299571 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGGTAGCACATATCGACGGAACACCCGCTCTGTAGAGGAAGTGGAATTATTGCTATAGTGATTTAGCGCGgcggtgagtgagtgtgttgttgttgtgtaaAAGATGAATAAAATGGAGAGTTTAAACTCTTTCTTTATAGAGAGGTTAATGAGTGTGGCCGGGGAGATATGTGCCGCGGTTAAAGAGGCGGTGTGTGAGTATCAGGAGGAGGCGGAGAGAACTAAACAGGAGAACCAGCGGCTGAAGGAGATTCTGACTGAGATCACCGTCTGTATCAACACCCAGGCTCAGAGAGCCGCAGATCTACAGCTACCTCGTGCTGATGGAGATCCTCCAGAGCAGAACTCCGACCAAAGACCACTGGACTCACATCTGTCAGAATTACAGCTGAACCTGGAACTTTCCACCACTGAGCAAGACCCTGATCCACGGCCACCATTGAATAATGTATCTGCAAGCAGCTCTGCCTTTGTTCATGGTCCAGATCCAGCCAGTCAAGCTGTTCGTCAGGAGTTCCAAAATTTCAGCCAGGAGCCACTGGACACAAATCCCCCAATTATACAAGTAAAAGAGGAGCTTCCATGCTCTCTCAGAATAATGCATCAGAATACTGAAGCCCACAAACCATTGAACAACCCACTATCCCCATCATCCTCTCCCTCTGCAGCAGCAGTATATAATGAGGAAACTCCTCAGCATCCTTTCAGAGACATTGTGAAGGAAGAAATCGGTGCTGAAGGTCCACATACCTCTGAATGTACAATCAAATTGGAACCGTGGGACTCGCAGGGTGTCTGCTCTGATAACGGAACCGTAGTACAAACCGAAAATCTATCAGAGAACCATCTGGAAGCTTTAAGGGAAGGTCCCGACAGCATCCCTTCTCTTCAGTATACAGTTCAATCTGATAATGTTCCTCAGAGCCAGAGCCCTGCAGGTCTTTTCTGCTGCAGGTACTGTCGAAAATCCTTCAAAAGTCGTGGCAGCTGAAGCAGCACATGGTCGTGCATCAGAAGTACAGGCCTTACCGCTGCGACGTGTGTGGAAAGTCCTACAGTTACGCACAAGTGCTGGAGATCCACTACAGGACCCACACTGGAGAGAGACCGTACAACTGTCGCTTCTGTGGCCGGTCCTTCAGACAGAGAAGTCACCTGACTGACCACGAAAGAATTCATACCGGGGAAAAGCCATATAGCTGTACAGTTTGTGGAAAGCGTTTCATCCAGTCGAGTCAGGTTAAGAAGCACTTTCGCAACCTTCATCAACGGACTGTATATCAGAAGTAACTACTGAATCGCTGCTGAAGGACATTTAATAGGTGTTACATGTTTTGTGTCTGCATTTAatgtagggatgcaccaatgtTGGGAATTCGATGATGATACTGTATATTGACATTTGTTACTTGCAGAAAGTAAAGACACCCtggtttaactttaaaattaattaaaactgaACGAAACGGACAAAATTTATATCACCATATAATCCTTCATTTCGGTCGATATGATATTCCAAtattgaaataaacattatagcCTCTGCCCTTGGTGTGCACAATGACATGCTTTTGGGGTTGggtgatattgtaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262099 lncRNA downstream 56764 27239426 ~ 27239902 (-) True G193160
TU262095 lncRNA downstream 66364 27230099 ~ 27230302 (-) True G193156
TU262036 lncRNA downstream 157430 27138083 ~ 27139236 (-) True G193110
TU262008 lncRNA downstream 297593 26927108 ~ 26999073 (-) True G193085
TU261975 lncRNA downstream 397262 26898271 ~ 26899404 (-) True G193062
TU262127 lncRNA upstream 24835 27324406 ~ 27324839 (-) True G193178
TU262133 lncRNA upstream 29171 27328742 ~ 27331162 (-) True G193179
TU262137 lncRNA upstream 56407 27355978 ~ 27356313 (-) True G193181
TU262141 lncRNA upstream 70604 27370175 ~ 27370433 (-) True G193185
XR_002651580.1 lncRNA upstream 83409 27382980 ~ 27384041 (-) True LOC111195339
XM_015605468.2 mRNA downstream 3857 27287220 ~ 27292809 (-) False LOC107197599
XM_015605467.2 mRNA downstream 3857 27287220 ~ 27292809 (-) True LOC107197599
XM_022682726.1 mRNA downstream 6347 27274657 ~ 27290319 (-) True LOC103031188
XM_022682727.1 mRNA downstream 12717 27274657 ~ 27283949 (-) False LOC103031188
XM_007247738.3 mRNA downstream 16612 27274657 ~ 27280054 (-) False LOC103031188
XM_015605469.2 mRNA upstream 1725 27301296 ~ 27303940 (-) True LOC103029919
XM_022682148.1 mRNA upstream 91234 27390805 ~ 27391571 (-) True LOC111195340
XM_007247730.2 mRNA upstream 145908 27445479 ~ 27453376 (-) True bcl2l15
XM_022682732.1 mRNA upstream 167221 27466792 ~ 27701331 (-) False LOC103046149
XM_022682731.1 mRNA upstream 167221 27466792 ~ 27701331 (-) False LOC103046149
TU262021 other downstream 263577 27031663 ~ 27033089 (-) True G193097
TU261852 other downstream 1418013 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other downstream 1418013 25874910 ~ 25878653 (-) True LOC111195415
TU261664 other downstream 2079116 25211675 ~ 25217550 (-) True G192815
TU260862 other downstream 4237861 23054633 ~ 23058805 (-) True G192251
TU262199 other upstream 125471 27425042 ~ 27476869 (-) False LOC103046149
TU262456 other upstream 894808 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other upstream 910453 28210024 ~ 28212718 (-) False LOC111195422
TU262455 other upstream 910620 28210191 ~ 28213070 (-) True LOC111195422
TU262651 other upstream 1276536 28576107 ~ 28583747 (-) False LOC111195343

Expression Profile