RNA id: XM_015605468.2



Basic Information


Item Value
RNA id XM_015605468.2
length 1317
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC107197599
representative False

Chromosome Information


Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 27287220 ~ 27292809 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AGAACTCTGCTGATAAACCAGTAGGGGGCGGTGTGGAGCTGAGTGCGTTTTTTCTCAGCAGACTGAGGCATTGAGGAAGCGGAGCGGCGTCCAGGAGAACTATTCAGATTTATTCACAACAAACCGAGGTTTAACATGAGCAGAATTGAGCACCTGAGCTCCTTCTTTATAGAGCGGTTAATGTCGGTGGCTGCAGAGATTTATGAAGCGGTTAAAGACACTGTTTCTGACTatcagagagagatagagctgaCTAAAGAGGAGAACCACCGTCTGAGGAAACTGCTGGAGGAGATCAGCCTCAGCGCCCGCGAAGAACCCGGAGACCCGGACACCgATCTGCAGCCCAGTCATCCTGAGCCGTCTCCAGAAAAACTAGACTTCTACCAAAGACCGCTGCCTTCAAATTCCTCTGTATTACAGCAGAAACTTGAGCTCACCTCCGTAAAACAAGAACCTGAGTCGCAGCAGCTGCCTCCAAATGATGTATCTGCAAGCGCTTCTCCATGTGCGAAGAGCGTCCACGACACATGGACTAGCCATGCAGACGGAATGCTTCATGAACCACAAAACGCCAGCCAAGGCCTACAGGACACAGAGCCCTCACTAAAACAGGGGAAGCTTGAGCTCGCCACCATGCAAGAAGACCCTCATCCCCAACAGAAGCATGTAGGTCAGTCATCATCGGTGTCCCATAAATCTTTGGATGTGGAGGGAAGAAAAGGTGACTGTCTATATAGAAACCCTGTTCTGATAATCAAGTTAGAACCATGTGACTTAAAGAAACCACAGTCATCTAAGCCCAGCCCCAATACTGCCGAAACCTGTAATCCAGTGTTGGAACCCATATCCACCCATGTTGAAATGACCAATGCTGCACCAGCAGCTGTGCCATCAGCAGAGGAAGCAGTGTCCAGCAGTGGCGTAAGTGATAACCCATTAATAACGAGGGTTTGGTCTCTAAATATGCACAACACCAGGACTGATAAAGAAGATCTGTACCACATAGAGAGACCGTTCCTCTGCGAGTCCTGCGGTAAAAGGTACAAACAGAAGAAGCACCTGAAGGACCACCAGAGACTTCACACTGGAGACCGGCGCTTCAGCTGCTCTGTATGTGGGATGcgttttttttggacaaatcAGGTCAAGGTGCACATTCAGCGCCACCACAAACGGCAGGAAGCTACAGTGCTTAGAATGCCATATTTGTAACATTGGAACATCATGAACATTGAATGTCTTTTAAATCTGCCCCAGGGATTCTCTACCTTTGTTGTTTGAATAtagtacaaataaaatgtgtgtttcttTGGA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU262099 lncRNA downstream 47318 27239426 ~ 27239902 (-) True G193160
TU262095 lncRNA downstream 56918 27230099 ~ 27230302 (-) True G193156
TU262036 lncRNA downstream 147984 27138083 ~ 27139236 (-) True G193110
TU262008 lncRNA downstream 288147 26927108 ~ 26999073 (-) True G193085
TU261975 lncRNA downstream 387816 26898271 ~ 26899404 (-) True G193062
TU262093 lncRNA upstream 2919 27295728 ~ 27305659 (-) True G193154
TU262127 lncRNA upstream 31597 27324406 ~ 27324839 (-) True G193178
TU262133 lncRNA upstream 35933 27328742 ~ 27331162 (-) True G193179
TU262137 lncRNA upstream 63169 27355978 ~ 27356313 (-) True G193181
TU262141 lncRNA upstream 77366 27370175 ~ 27370433 (-) True G193185
XM_022682727.1 mRNA downstream 3271 27274657 ~ 27283949 (-) False LOC103031188
XM_007247738.3 mRNA downstream 7166 27274657 ~ 27280054 (-) False LOC103031188
XM_022682725.1 mRNA downstream 76904 27197051 ~ 27210316 (-) False LOC103032351
XM_007247742.3 mRNA downstream 76905 27197051 ~ 27210315 (-) True LOC103032351
XM_007247741.3 mRNA downstream 116225 27162747 ~ 27170995 (-) True prelp
XM_015605466.2 mRNA upstream 3857 27296666 ~ 27299571 (-) True LOC103046766
XM_015605469.2 mRNA upstream 8487 27301296 ~ 27303940 (-) True LOC103029919
XM_022682148.1 mRNA upstream 97996 27390805 ~ 27391571 (-) True LOC111195340
XM_007247730.2 mRNA upstream 152670 27445479 ~ 27453376 (-) True bcl2l15
XM_022682732.1 mRNA upstream 173983 27466792 ~ 27701331 (-) False LOC103046149
TU262021 other downstream 254131 27031663 ~ 27033089 (-) True G193097
TU261852 other downstream 1408567 25874910 ~ 25878653 (-) False LOC111195415
TU261855 other downstream 1408567 25874910 ~ 25878653 (-) True LOC111195415
TU261664 other downstream 2069670 25211675 ~ 25217550 (-) True G192815
TU260862 other downstream 4228415 23054633 ~ 23058805 (-) True G192251
TU262199 other upstream 132233 27425042 ~ 27476869 (-) False LOC103046149
TU262456 other upstream 901570 28194379 ~ 28212718 (-) False LOC111195422
TU262454 other upstream 917215 28210024 ~ 28212718 (-) False LOC111195422
TU262455 other upstream 917382 28210191 ~ 28213070 (-) True LOC111195422
TU262651 other upstream 1283298 28576107 ~ 28583747 (-) False LOC111195343

Expression Profile


XM_015605468.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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XM_015605468.2 Expression in each Bioproject

Bar chart with 7 bars.
XM_015605468.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.