RNA id: XM_015607748.2


Basic Information

Item Value
RNA id XM_015607748.2
length 2805
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC103042113
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 29233512 ~ 29254829 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATTAAGATTGGACTTAGTATTTTGACTGATATTTATGCTAGTATCAAGATTAAGATTGGGGGTTGGCTGTAAACTGGTTCTAAAGTTAGTATCAGGCTTTAGACTGATTTTAATGTTAGTATTAGGATTAAGACTGGGGGTTGCCTGTAGACTGGTGCTGAAGTTGGTATCAGGCTTTAGACTGAAGTTAATGTTAGTATTGCAATTAAGATTGATCCAACATTTGATCCCCCACCCCTGTGTCTTATCTATGACCCCCACCATTACCGTCTTTAGTGTCTTCACCTTTAGATCTCGCGCCCAGACCCAATCAGCCCCCTACCCTTGGTAAAGCTCCCGGATGCACGCTCGCCCCTCCCCCGCCGTTCCGCGCGCTACTTAAACTCCAGCGCGAGTTACAGCGCTGCTGTGAGCGCGAGCTGCCTGTGGCTGAATCTACTGCATTAAAGTCGGACCAGCGCGCGCCCTTCTTCTGCACGAGTCTGCGATAACCCGGATTAAAGGGATCTTTAGACATCGTCTTCCTGCTTCTCtacttcatcatcatcttcattatCCTCATCTTCCTCAGAATGCTCtctgcgctgctgctgctcgtGTGGAGCTGGAGCGTGCAGCCGGTGTCGGGGGCGCGCGGTGCGGCGGAGAGCCCGTTTCCCGCTGCTGCGGCGGAGCGGCGCGCGGTGCAGCGGGAGATCCTCGCGCTGCTCGGGCTGCCTCACCGCCCGCGGCCGCCCTCCCCGCTAAAGCGCACAGCCGCCCCGCTCTACATGCTGGACCTGTACCGCGCGGTACTCGCGGACGGAACCGAGCCGCGCGCGCCCCTCCCGCCCACCGAGCACGAGGAGGAGCGGCTGCTGAGCGACGCGGACATGGTGATGAGCTTCGCCAACCTGGTAGTGGATCCTGAGGAAGACCCTAATGTGTTTCATCAGTACCACCGCTTCGACCTGTCCCGCATCCCGGACGGGGAAACGGTAACGGCTGCAGAGTTCCGCGTCTACAAGGAGTTTGTGCACGAGCGTTACGAAAACGAGACGTTCCACGTCAGTGTGTATCAGGTGCTGCGCGAGCAGGACGGAAGGGAATCGGATCTGTTCCTGCTGGACTCTCGGGTAGTGTGGGCAGCTGAAGAAGGATGGCTGGTGTTTGACCTCACGGCCACCAGCAACCACTGGCTGCTGCACCCGAGTCAAAACCTGGGGCTGCTGCTGGCTCTGGAGAGCGTAGAAGGCGAGCGCATAAACCCCAGGGCGGCAGGGCTGGTGGGCAGCAGAGGACCTCAGAACAAGCGGCCATTCGTCATAGCGTTCTTTAAAGCTACCGGAGTGCGTCTCCGCAGTGTCCGCTCGGCCCCAGGACACAAGAGGAACCAGAACCGGTCCAAAGCCCCGAAACATGCGGCTCCGTCCACCCAGGAGGCCCTGAAACTGGCCGAGGCTGCAGAGAATGTCAGCGTGGATCCAAAACAGGGCTGCAAGAAACATGAGCTGTACGTTAGCTTTCGGGACCTGGGGTGGCAGgACTGGATTATAGCTCCAGAAGGCTACGCTGCGTATTACTGTGAGGGAGAGTGTGCGTTCCCTTTAAACTCCTACATGAACGCCACCAACCACGCCATCGTTCAGACTCTGGTGCACTTTATAAACCCGGACTCCGTCCCGAGGCCGTGCTGCGCCCCCACCCAGCTCCACGGCATCTCCGTACTTTACTTCGACGACAGCTCCAACGTCATCCTAAAGAAGTACCGCAACATGGTGGTCAGAGCCTGCGGATGCCACTGACCATGTATTCCACTGGTCATTGACTGAGAGAGAACAATGAAGAAAGCCAGTCAGTTGTTCATCCAGGAGCCATGTGTTTTAATGGGACTCGTTAACTGGGGCAATGCTGGCATCTGTGCCACACAGAACCACAGTGGAAATATGGTGGAAATAGGGCACCCAAAGTGGAAAATAGTGGGAGGCACATTGAAACGGCATGTTTCAATCCACGAGCACAGTGAAGCATGAAGAGATGGGGCAATAAAGGCTCACTTATGGATTGGAATTGGGTTAAAGTGATTGTTAAAGTTTGGTAAATCAAATAAGTCAAAGTTCAAATTGTGCTTTTTGGCTCTAAGGCTAAAGCAGTGAGTAAACTTATAAACACCTGTTAGTACAGAACACCCAAATAAATCTGttaagtataaaaactaaacaaagtaTGGAGACTTAGGTCAACCATAAAAAACCATCAGGACCTTCTCTAGGCCTTTAAAAATGTCAGATTATTTTtggaatttaaaaaagaaaatctgcatttttttatttaatagtgtTATCAGGCTTGTTGTTCTTGTAAAACCAAATATTTCAAAGACAAAATTCACAAAATGGAagtgaaataagaaaaaagagatCTTAGATGTGCTTTTTTCTACACTTCATGCTGTTCTTTCTTAGAAAAGCTTTTGTGAATCCGTCCCCTGGAGTATTTGATGAACTACAGACATAACTAGAAAGTAATGGAGGAATCAACCAACCCTTTGTAGCTTCGTAGATCAGGTTTTGATTTACAGTTAGTAATAGCTTCACAAGAAACATCAGTCCAGGTCTGCTGGAAGCCCCTGTGTATGCCACTGACTGTGAATATGAGAGTAGTACGTCCAGGTTTCAGTCAGGTTGCTGGTAATGGAGAACAGTGACAAAAGTTCAGTGCAAAAATTCTTTACTGCAATAACgtgaaaataatgcaaaggaaaatatatgtaaaagtcTATtgtaaatttcaaataaaacttATTGAATGTGTTTTACAAGTCT

Function

GO:

id name namespace
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048264 determination of ventral identity biological_process
GO:0040007 growth biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0001947 heart looping biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005576 extracellular region cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04662 BMP4; bone morphogenetic protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651643.1 lncRNA downstream 545 29227704 ~ 29232967 (-) True LOC111195426
TU262779 lncRNA downstream 56647 29176455 ~ 29176865 (-) True G193638
TU262778 lncRNA downstream 57388 29175914 ~ 29176124 (-) True G193637
TU262689 lncRNA downstream 302591 28875917 ~ 28930921 (-) True G193568
TU262660 lncRNA downstream 637505 28595651 ~ 28596007 (-) True G193540
TU262783 lncRNA upstream 9147 29263974 ~ 29266389 (-) True G193642
TU262795 lncRNA upstream 41974 29296801 ~ 29297084 (-) True G193649
TU262798 lncRNA upstream 124920 29379747 ~ 29380489 (-) True G193652
TU262810 lncRNA upstream 329625 29584452 ~ 29584846 (-) True G193662
TU262828 lncRNA upstream 477745 29732572 ~ 29733272 (-) True G193678
XM_022682771.1 mRNA downstream 14504 29177346 ~ 29219008 (-) False LOC103040895
XM_022682769.1 mRNA downstream 21266 29177346 ~ 29212246 (-) False LOC103040895
XM_022682770.1 mRNA downstream 21279 29177346 ~ 29212233 (-) True LOC103040895
XM_022682767.1 mRNA downstream 60017 29151721 ~ 29173495 (-) True LOC103042433
XM_022682150.1 mRNA downstream 647290 28582978 ~ 28586222 (-) True LOC111195343
XM_022682774.1 mRNA upstream 15094 29269921 ~ 29278564 (-) False LOC103040276
XM_022682775.1 mRNA upstream 15094 29269921 ~ 29278313 (-) True LOC103040276
XM_007256856.3 mRNA upstream 25323 29280150 ~ 29291603 (-) True cse1l
XM_022682776.1 mRNA upstream 47707 29302534 ~ 29759625 (-) True ptprg
XM_022682154.1 mRNA upstream 1464149 30718976 ~ 30720245 (-) True LOC103043315
TU262661 other downstream 634874 28597555 ~ 28598638 (-) True G193541
TU262651 other downstream 649765 28576107 ~ 28583747 (-) False LOC111195343
TU262654 other downstream 649765 28576107 ~ 28583747 (-) False LOC111195343
TU262455 other downstream 1020442 28210191 ~ 28213070 (-) True LOC111195422
TU262454 other downstream 1020794 28210024 ~ 28212718 (-) False LOC111195422
TU262902 other upstream 910934 30165761 ~ 30180126 (-) True G193737
TU263040 other upstream 1554967 30809794 ~ 30830946 (-) True spcs1
TU263041 other upstream 1554967 30809794 ~ 30830946 (-) False spcs1
TU263184 other upstream 1915512 31170339 ~ 31172469 (-) False LOC103037496
trnae-cuc_20 other upstream 1919980 31174807 ~ 31174878 (-) True trnae-cuc_20

Expression Profile