RNA id: XR_002651586.1


Basic Information

Item Value
RNA id XR_002651586.1
length 2174
RNA type misc_RNA
GC content 0.48
exon number 11
gene id cers5
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 510575 ~ 538216 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGGGCCGAGGCGGAGCTCCGTACTTCCTCCTCCGGGCTCCATCACGGGTTGGAAACACTTCAATGGTGGTTCGGGCtcggcgctgctgctgctgctgctgctgctgctggaaggCGGACGGATAGCTCCCTCGCCtctttattagtgttattattattatttttaatattatttcccCTTCAGGTACTAATTCTCCCTCTTCTGGGGACTTTTCTCCGTATCATGGCCGCTTTGGTCGACTGGTTTTGGGACGAGAGGTTCTGGCTTCCTCACAATGTAACTTGGGCGGACTTGGCGGATCCTGCGCCCGGGGTGGAGTACCCTAAAGCCGGCCACTTGCTCAGAGCTTTGCCCTTGGCCTTGGGGATCTTCGTCGTAAGGATATTCTTTGAAAGGTTTATAGCAGGACCCTGCGCAAACATCCTACAGATCCAGAGTGAGGTGATCCGGAGAGCCCAGCCAAACGCCATCCTAGAAAAAGTGTTTACATCAGAAACAAAGTCCCCAGACTCACGTAAGCTGGATGGGCTTTCCAAGCAGTTGGACTGGGACGTGCGAAAGATCCAGCGATGGTTCCGACACCGGCGGAACCAAGATAAGCCCAGCACAAGAACCAAGTTCTGCGAGAGCATGTGGAGGTTTACGTTTTATCTGTGTATATTTACCTATGGGTTCTGCTTCCTGTGGCAGTCTCCCTGGATGTGGGACACGCGGCAGTGCTGGTATAATTACCCATATCAGGTGCTCACTCCTGGTCTGTATCACTACTATGTGACAGAACTGGCCTTCTACTGGTCTCTAATGTTCTCCCAGTTTACAGACATCAAAAGAAAAgACTTTCTTATCATGTTCGTACATCATCTGGCCACAGTCAGCCTGATCAGCTTCTCATACGCAAACAACATGGTGCGGGTGGGCAGCCTCGTCCTGTGCGTTCACGACACGTCCGACTTCCTCTTAGAGGCTGCCAAGTTGGCGAACTATGCCAAATACCAGCGTCTGTGTGACTTCCTGTTTGTGGTGTTTGGTGCAGCTTTCTTTGGAACCAGGCTGATCATTTACCCTTTCTGGATTCTGAACAGTACGATGTTTGAGAGTTGGGAGATCGTCGGGCCGTACGCCTCCTGGTGGGTCTTTAATccgctgctgctggtgctgcagGTTCTGCACATCATCTGGTCCTACCTCATCGCCCGCATCGCCTTCAAAGCCCTGATGAGGGGAAAGAACTTCTCCACAGgcttctttccctccctctcctcgtcttcttcttcttcttcttcggaAGGTCGTTGCTGTCTTTCTATCGCTCTTTCCTGACTGAGATCTCTCGCTTTTCTCTCTGCTCCCTAAGCGCCTCTAAGCTCCCTAAGCTTTTATGGTCTTGTAGAGCTCTTCTCTTTCCTCTCCTCAGCAGTCTCTAAAGACGTCCGCAGTGATATCGAGAGCAGCTCAGAAGAAGAAACTGAAACGAACCAAAGTCACTCAGCTTCACCCAAACGAGAGAACGGCACCAACGGCCATTTCAGCTCCAGACCCTGGACCCAGAAGAACGACAGCTTGTGACCCGGCCCGACCGGACCGGACCTCCCTGCCCACTCCCAGAACCGCCGTCTCCAGAATCCCTCAATCAGACATTCCTTCATCATGTTTCCCCCAAACCTTAAATTATCGAGGGAAGCCTGAGACTGTGCTCATTTCCACTACACACTCTGAGCTGACTTTATTTAAGCCGTGTTATGGTGAAGATTATGATGATGGCTTTATGGACACTGACGCTTAAtgtgtgaaataaataataataataataaaaagagaaaaacaaaaaataaataaaacacaaccaaacgGGACGAAACGTGAGATTAAACAAGTGATTTTTTATTCCCTTGtttcagaaagaaagaagtgaAAGTGCGCTCACTGTCTTCCTAAAGCTTCACGTTTTACTGAAGTTAGAGAAGAAGAAGTCCTCTCCCACTCCTGTTTTATTCCTCAGTCTGATGTACTTGAGCTTGTTTTGTATTTCACTGTTCAGttcactgtttttgtttttttttcttttgcctgttctgtttttttgttttcagtcgATATTTTTATGTGAGACCaaataagtttattaaaatatgattgATTGCGTCACACTGTAAAGAAAGATTTGGTCGTAAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K23727 CERS5_6, LASS5_6; sphingoid base N-palmitoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252714 lncRNA upstream 12167 495704 ~ 498408 (+) True G186385
TU252694 lncRNA upstream 86764 422903 ~ 423811 (+) True G186375
TU252687 lncRNA upstream 169757 313960 ~ 340818 (+) True G186368
TU252548 lncRNA upstream 216513 293455 ~ 294062 (+) True G186279
TU252524 lncRNA upstream 256545 221116 ~ 254030 (+) True G186264
TU252734 lncRNA downstream 20736 558952 ~ 563539 (+) True G186401
TU252737 lncRNA downstream 21183 559399 ~ 561512 (+) True G186402
TU252733 lncRNA downstream 23538 561754 ~ 563539 (+) False G186401
TU252750 lncRNA downstream 77102 615318 ~ 626377 (+) True G186409
TU252751 lncRNA downstream 88496 626712 ~ 628123 (+) True G186410
XM_007251509.3 mRNA upstream 5535 495073 ~ 505040 (+) True gpd1
XM_007251508.3 mRNA upstream 17811 475395 ~ 492764 (+) True smarcd1
XM_022682179.1 mRNA upstream 38531 470063 ~ 472044 (+) True LOC111195351
XM_022682176.1 mRNA upstream 53166 442464 ~ 457409 (+) True lactbl1
XM_022682177.1 mRNA upstream 53166 442464 ~ 457409 (+) False lactbl1
XM_007251504.2 mRNA downstream 3114 541330 ~ 543530 (+) True bcdin3d
XM_022682184.1 mRNA downstream 30967 569183 ~ 577902 (+) True LOC103029902
XM_007251499.3 mRNA downstream 44582 582798 ~ 585804 (+) True ccdc51
XM_007251500.3 mRNA downstream 44612 582828 ~ 585804 (+) False ccdc51
XM_007251501.3 mRNA downstream 49006 587222 ~ 601007 (+) False mcm2
TU252478 other upstream 395488 107396 ~ 115087 (+) True G186231
TU253378 other downstream 2442281 2980497 ~ 3002015 (+) True G186880
TU253515 other downstream 2854171 3392387 ~ 3394843 (+) True G186978
XR_002651654.1 other downstream 3385236 3923452 ~ 3923662 (+) True LOC111195456
trnae-cuc_2 other downstream 4251760 4789976 ~ 4790047 (+) True trnae-cuc_2
XR_002651591.1 other downstream 5608469 6146685 ~ 6147519 (+) True LOC111195362

Expression Profile