RNA id: XM_022682288.1


Basic Information

Item Value
RNA id XM_022682288.1
length 1710
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC103024768
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4900015 ~ 4934604 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctctgttcactcCGTCTGTacacatgtatgtgtgtgttattagtgAGCTGATGGGAGTGAGCTGTATTGGGAGTGTGCTGTAGTGAACCCGGTTCGGTTCGGGCTGAGGCGGATCTGTGGTACCGGTACCGGTGCGGTGAGGATGAGCGAGTAACCCAACAAAACAAGCCTCAGCTGCAGGAACAGAACAAAGACACGAAGATATACAGGCAGAGCACAGCCATGACTGAGATCGAGACTGAGATTGATAAATCCCACCTGCCACGGGTCTATGATGTCGAGCAGTTCTACAGCTCTAACGTGCAGAAGAACCAGGCGGTGCAGAGTGATGTTCGTCTAGCCCGAcggctgcaggaggaggaggagcagaggGTTCATCAAAGCCACCAGATTCAGCAAATGGAGGAACAGGACTGTGAGTACGCAAAGATGATTCAGGAGGAGCTCAGAAGACGCGACGAAGAAGCTCGgaggagagaagaagaggaTGAGGAACTGGCCAAGCgtctgcaggaggaggaggagctggagatgAAGCAGCAGAGAGCAGAGGCCGGTCAGCCTGCGGACACCACACACTCCCCACTCAGTGAAGAGCTGTGGGCGCAGTTGGTGCGGGATACTGAGCTGGCCCGTACTCtacaggaggaggaagatgggCAGCCTGACAGGAAGAGCCGGGGATCAGACGTGGATTTCCGTGCTGCTCAAGTGGCGCAGGATGAGGAGATTGCCCGCTACATGCAGCGACAGGAGCGAAAGAACAGCAGGAGCAGGAGGTCACAGGACCTAGAGGTCCAGGAGAGGTCACTTGAGGTCATTCGGAAAGACGCTGACAACACGACCAGCAGAAAAATGGAGCCTCTGCAAATGCCGAGGGAGAGGCTGAACTCTGAGGGTCTTCACTCACCTGTGGAAGAGGAACACACACTCGAGCAGCATCACCTAAGCCCTACCTGCAATACTCTGCGAACACAGCCAGTCCGTAACATCGCAGAGGAGCTGGACCCAACTTTCACCaccagaaagagagacagccaGATATCCACCAGCCCACCACCAGGAATATGCCTGGCACCACGGACCCCTCACAGTATTTTCTATGATTACCTGCCTGAACCCACATTCGTCCCGCCCACCAGACGCCATGTTGACAAATTGGTGCGGCCCAAAGCCAAAGAGAAACGAGAGAACTGCAAGCAACAGTAACTGGAATATTTAGAAGGTGGATTTATGCTTCTGCGTCAGAACAACAACAACGAAGAGTCTACGACATAGCCTGCGCAAGTGGTTTACGCCATTTTTTAATGCGCCACGATACTGGTGCATTGGTGTGTCTAAACACTAGTTGAGAATGAAGACTCTGTGCCACTgcgtttttaatcttttttttggtGTACATCAGTTTCTGCAatgaaaaatctgagaaaaccGTGAATGATATGGTCTGTGTAGCCACTGAACCAGTTCAGTTCATTCAACTGGATTTAAAGGTGTATTCACACTAGGCAATCCATGCGTTTCCGGGCTTGGTTACCTTCCAAAGCATGTGCACATGCACAGTACACTGAACAGTGCCCTGGCCTGCTTGAAGAGTGATACAGTGTGAGCACTATCTGTGCACTAGAagtgcatatcgtcgctgtccaatgaaaaacacttatctccaaaacagcaactttacaggagagggaaaaaaccttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254161 lncRNA downstream 29195 4869891 ~ 4870820 (-) True G187432
TU254160 lncRNA downstream 30227 4868925 ~ 4869788 (-) True G187431
TU254085 lncRNA downstream 98114 4801108 ~ 4801901 (-) True G187375
TU254069 lncRNA downstream 181347 4715615 ~ 4718668 (-) True G187365
TU254074 lncRNA downstream 181347 4715615 ~ 4718668 (-) False G187365
TU254169 lncRNA upstream 39624 4974228 ~ 4989258 (-) True vamp3
TU254170 lncRNA upstream 39628 4974232 ~ 4989258 (-) False vamp3
TU254309 lncRNA upstream 556777 5491381 ~ 5492666 (-) True G187545
TU254311 lncRNA upstream 556777 5491381 ~ 5492494 (-) False G187545
TU254310 lncRNA upstream 557231 5491835 ~ 5492666 (-) False G187545
XM_007251429.3 mRNA downstream 42706 4843232 ~ 4857309 (-) True LOC103024243
XM_007251433.3 mRNA downstream 75940 4810684 ~ 4824075 (-) True LOC103025299
XM_007251434.3 mRNA downstream 76015 4810683 ~ 4824000 (-) False LOC103025299
XM_022682273.1 mRNA downstream 288285 4584260 ~ 4611730 (-) True mmel1
XM_022682271.1 mRNA downstream 340216 4538302 ~ 4559799 (-) False slc45a1
XM_022682290.1 mRNA upstream 11968 4946572 ~ 4972846 (-) False per3
XM_022682289.1 mRNA upstream 11968 4946572 ~ 4972846 (-) True per3
XM_007251424.3 mRNA upstream 39624 4974228 ~ 4989254 (-) False vamp3
XM_022682294.1 mRNA upstream 60393 4994997 ~ 5466875 (-) False LOC103022065
XM_022682295.1 mRNA upstream 60393 4994997 ~ 5466875 (-) False LOC103022065
TU253783 other downstream 1120361 3778014 ~ 3779654 (-) False LOC107197677
TU253769 other downstream 1125172 3765863 ~ 3774843 (-) True G187154
TU253770 other downstream 1125172 3765863 ~ 3774843 (-) False G187154
TU253771 other downstream 1125172 3773390 ~ 3774843 (-) False G187154
TU253781 other downstream 1144338 3749815 ~ 3755677 (-) True G187156
XR_002651590.1 other upstream 584189 5518793 ~ 5522920 (-) False svbp
TU254659 other upstream 2043047 6977651 ~ 6982840 (-) True LOC111195363
TU254656 other upstream 2044091 6978695 ~ 6982840 (-) False LOC111195363
TU254662 other upstream 2044091 6978695 ~ 6982782 (-) False LOC111195363
TU254657 other upstream 2044220 6978824 ~ 6982840 (-) False LOC111195363

Expression Profile