RNA id: XM_022682302.1


Basic Information

Item Value
RNA id XM_022682302.1
length 2262
RNA type mRNA
GC content 0.46
exon number 4
gene id wnt4
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5725343 ~ 5731344 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCAACGTGGAGGTGATGGACGCGGTCCGTAGAGGAGCACAGTTAGCCATCGACGAGTGCCAGTACCAGTTTCGCAACCGACGCTGGAACTGTTCCACACTGGAGACCGTCCCTGTCTTTGGGAAGGTGGTCACCCAAGGCACCAGGGAGGCCGCCTTCGTGTATGCGATCTCTGCTGCAAGCGTGGCCTTCGCCGTGACCAGGGCCTGTAGCAGTGGGGAGCTGGAGAAGTGTGGCTGCGACCGCAACGTGCACGGCGTAAGCCCAGATGgcTTCCAGTGGTCAGGGTGCTCTGATAACATCGCCTATGGAGTCGCCTTCTCCCAGTCGTTCGTGGACATCAGGGAGCGAGGCAAAGGGCAGTCGTCCAACAGAGCACTTATGAATCTCCATAATAATGAGGCGGGGAGGAAGGCCATTCTGAACCACATGCGAGTGGAGTGTAAATGCCACGGTGTCTCAGGCTCCTGCGAGGTGAAGACCTGCTGGAAGGCGATGCCGCCGTTCCGCAAAGTGGGCAACGTCATCAAGGAGAAATTTGACGGCGCCACGGAAGTGGAACAGCGCAAAATCGGCACCACCAAAGTGCTGGTGCCGCGGAACTCGCAGTTCAAGCCGCACACGGACGAGGACCTGGTCTACCTGGACCCCAGCCCGGACTTCTGCGACCACGACCCCCGGACGCCGGGCATGCTGGGAACGGTGGGCCGCTACTGCAACAAAACCTCCAAGGCCATCGACGGCTGCGAGCTGATGTGCTGCGGCCGCGGCTTCCACacggaggaggtggaggtggtggacAGGTGCAGCTGCAAATTTCACTGGTGCTGCTACGTCAAGTGCAAACAGTGCCGCAAGATGGTGGAAATGCACACGTGCCGGTGATCCACTTACGCGCTCCTTCAGCTCCCCTCTGCTGAACTTTATTTAGAACGACTGACTCCCTTTTCCCTGCCACTTCCTTGAACCTTAAGACCACCCTGGGAAACCAGACGAAtatgagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaaataaaaaaaacacacacacagagggaacAGAGACATTCCCCCAATCATACATTCATAcattaaagaattaaagaacATGTCATACATGGGACGTACATATCTAGGGGCAAATagagttgtttttattatttttttgttggtatttttatttcaagTCCCACTTGAGAGTAtttttctctccattttttttcttttgtttttaaatgtgattgctctcttatttttgtatttttttttttaacttattggAATCAGAGAGTGAATTTTTAATGTGACTTGCTCCAAGGGGAGTGGTACGGGGTCCAGGAGGGTTGATGGACTAGGATTAGAACAGCGGGGTTCTGAAGGAGACGAGTTGGAGTTGGAGTTGGAGATGAAATTGGAATTGGCCGGGGGTAAAGTTTCACCCCCTCCAATCATTGATGCTGCTTTAGGATCTCACCTGGAGTGACGGACATCAAGGGATTTTTTTCTAACGGACTTCCAGAACGAGGAACATTACATCTTACATCTTGAGATGCAGTCCAGGTGTacattttacgttttttttttctctcggaAAGAAAAGTAGCATTTTAGATTTGTATTTGGCCATTTGTATGTGGCTGAAGGATGCTgcttcagaaaaacaaaaactcaccaATAATGTGTACAGCAGTGATGAtatcattataatattattattgaggGAAGCAAACCAACTCAAAAAAAACGAGACTGAACAAACCAACTACAAGCATACCGTTGAAAcacttacagaaaaaaaagaacagtgtattaaattaatttcaaaATCCTAGAAGGTACACACCATTGGCTTTTGGAATGGTTACCATCTTTCTTCCCAaaaataacatcagaaaaaaaaaacaagtttttccATGGACCATGGATACTGTGCACGGTGACTCCAGCACTTTTCATCTCCAGATGCACataccacaaataaataaaaaaaaaaaaattcccaaaGCATTCCCTGTTCTATCGACGTTGAGGCAGAGTGACTTATTGAGTTATTTATGACAACTATGTACAACTACCATAATTCCAAGTGTTCTATAGTACAACCATGCTATCCAATATGCTTCTAAAGAAACATAGCTCTGTAAAAGACTTATACACTGAAGAGGACTATAATGCATATGATGAATGTATGTCTAATTGAAATATATGCCATGTGAAAGACTGA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007507 heart development biological_process
GO:0045165 cell fate commitment biological_process
GO:0048841 regulation of axon extension involved in axon guidance biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0021986 habenula development biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K00408 WNT4; wingless-type MMTV integration site family, member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254226 lncRNA upstream 84287 5640822 ~ 5641056 (+) True G187484
TU254209 lncRNA upstream 223467 5499104 ~ 5501876 (+) True G187477
TU254207 lncRNA upstream 229929 5494470 ~ 5495414 (+) True G187475
TU254202 lncRNA upstream 234086 5490085 ~ 5491257 (+) True G187471
TU254203 lncRNA upstream 235513 5488960 ~ 5489830 (+) True G187472
TU254229 lncRNA downstream 15554 5746898 ~ 5763491 (+) True G187487
TU254231 lncRNA downstream 20823 5752167 ~ 5763491 (+) False G187487
TU254239 lncRNA downstream 28173 5759517 ~ 5843830 (+) True G187493
TU254245 lncRNA downstream 65836 5797180 ~ 5798979 (+) False p3h1
TU254361 lncRNA downstream 154458 5885802 ~ 5886002 (+) True G187583
XM_007251419.3 mRNA upstream 207778 5508308 ~ 5517565 (+) False fbxo2
XM_022682301.1 mRNA upstream 207778 5508394 ~ 5517565 (+) False fbxo2
XM_022682300.1 mRNA upstream 207778 5511811 ~ 5517565 (+) True fbxo2
XM_022682298.1 mRNA upstream 238930 5472482 ~ 5486413 (+) True LOC103021734
XM_007251425.2 mRNA upstream 785278 4936994 ~ 4940065 (+) True LOC103023081
XM_007251413.3 mRNA downstream 34105 5765449 ~ 5771297 (+) True ap5b1
XM_022682303.1 mRNA downstream 48547 5779891 ~ 5798591 (+) True p3h1
XM_007251410.3 mRNA downstream 86640 5817984 ~ 5835626 (+) False cldn19
XM_007251411.3 mRNA downstream 86642 5817986 ~ 5835626 (+) True cldn19
XM_007251407.3 mRNA downstream 510683 6242027 ~ 6258457 (+) True LOC103043936
trnae-cuc_2 other upstream 935296 4789976 ~ 4790047 (+) True trnae-cuc_2
XR_002651654.1 other upstream 1801681 3923452 ~ 3923662 (+) True LOC111195456
TU253515 other upstream 2330500 3392387 ~ 3394843 (+) True G186978
TU253378 other upstream 2723328 2980497 ~ 3002015 (+) True G186880
XR_002651586.1 other upstream 5187127 510575 ~ 538216 (+) True cers5
XR_002651591.1 other downstream 415341 6146685 ~ 6147519 (+) True LOC111195362
TU254736 other downstream 1361421 7092765 ~ 7098669 (+) False LOC103029365
trnaq-uug_4 other downstream 1460810 7192154 ~ 7192226 (+) True trnaq-uug_4
TU255026 other downstream 2381146 8112490 ~ 8113242 (+) False LOC111195452
XR_002651599.1 other downstream 2525454 8256798 ~ 8271689 (+) False agtrap

Expression Profile