RNA id: XM_022682308.1


Basic Information

Item Value
RNA id XM_022682308.1
length 2326
RNA type mRNA
GC content 0.50
exon number 16
gene id cdk18
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 6395390 ~ 6502396 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCACTTCACGCCTTCTAAATAAGACGCGTCCAGTTGTGGATTATCTGCGTCTGCTGCCACAGAGCTGGAGGCCCCCACCCCCCCGCCACCGGCGCccgcctctccctctctccctgcctctgcctctctctctctctctctccctctctctctccctctctctctcactggcaGCAGTGCAGCGAGAGACGGGCTCCTGCTTCTCTCCCGCAGTCCTCTCCACTACTGAACTCTGGGCTTGaagaaatgaacaaaatgaaGAACTTCAAGCGCCGTTTCTCACTGTCCGTGCCAAGAACCGAGACGATAGAGGAGAATGAGTTCACAGAGCAGATAAACCAGCTCAACATTAGACGGAATGAAGaTATGGTACCAAACAGCCTGGGCTTGCACACCTTACACCCGGAGGCCAGTCCAGTGGGCTCAGACCCTCAGGCCCCATCTCCTACTCAGCTGCACTACCGCAACAAAGTTCAGCACCGTCGATTCTCCATGGAGGATGTCAGCAAGCGGATGTCTTTGCCTATGGACATTCGCCTGCCACCCGAGTTCCTGAAGAAGCTGCAGATGGAGAGCCCGGAGCCCTGCAAGCCACTTAGCCGCATGTCTAGACGAGCCTCGCTGtCTGATATCGGGTTCGGGAAACTGGAGACCTACGTGAAACTAGGCAAACTGGGAGAGGGCACTTACGCCACGGTATTCAAGGGGCGCAGCAAGCTGACAGAAAATCTGGTGGCCCTGAAAGAGATCCGTCTGGAGCATGAAGAAGGAGCCCCGTGTACGGCCATCAGGGAAGtgTCGCTGCTGAAGAACCTGAAGCATGCCAACATCGTTACTCTGCATGACATCATTCACACTGACCGCTGCCTCACACTGGTCTTTGAATATTTGGACAGTGACTTGAAGCAGTACCTAGACAACTGTGGAAACCTCATGAGCATACACAATGTGAAGATATTTATGTTCCAGCTCCTCCGTGGTTTATCCTACTGCCATAAGAGGAAGATTCTACACAGGGACCTCAAGCCACAGAACCTGCTCATCAATGAAAAGGGAGAGCTGAAGCTGGCCGACTTTGGCCTGGCAAGAGCCAAATCCGTCCCGACGAAAACCTACTCCAACGAGGTGGTGACCCTGTGGTACCGGCCCCCCGACGTTCTGCTGGGTTCGACGGAGTACTCCACACCTATAGACATGTGGGGCGTGGGATGCATTCTCTACGAGATGGCGACGGGGCGGCCCATGTTTCCTGGCTCGACTGTAAAGGAGGAGCTGCACCTGGTCTTTCGCCTCATGGGCTCCCCGTCTGAGGAGACCTGGCCTGGGATTACAGCTAATGAGGAGTTCAAGTCCTACATGTTCCCTCAGTATAAAGCCCAGGCTCTTATAAACCACGTTCCCAGGCTGGACACAGAGGGCATTGACCTTCTCTCAGCTCTTCTACTGTACGACACTAAGAAACGGAGCTCAGCCGAGGCGTCTCTGAGACACGCGTACTTCCTCAGCCTGGGCGAGAACATCCACTCCTTACCAGACACATCATCTGTGTTCTCGCTAAAGGAGGTGCAGCTGCAGAAAGACCCCGGCCATCGCAGCTCTGTCTTTCAGCCCCCAGGCCGGGGCAAGAACCGCAGACAGAGCATATTCTAAAGGCTGATACAGTGATACAGCCATCCTAACGAAGAGGATGCGCATCGAAAGAACAACATCACTATGAAGCAAATGACTGTACCTGACCCTTCCACGTACGACCTGCCTGCCCGTCTACTGAACCCTCGTCTCAGTGATACACTCAGCTGAAGACAGGAGACTGGAAGTCTTAACACACACTGACGTCAACTGTAATCAGCACTACTAACTGTATTTACCCTGTTTACATCTGGTCCCTTAATGCGGTTTGAGTATCAGGATTGTATCTGGATGTGTTGAAACAACATAATAGTGCAGAAAAGTGTGATCGAACCCAAGACATACGTAATTTATTTGATCGCTCAATTCATACATGCACCTGAGCCACATGTTATAGAAGTGCTAGCTATGACTAGGGGTGGAGAAAATATCGATATCACGATATAtcgtattttgttttgtttcgttTGCAATACTTTATTGATACATGCTGTCAAATAGCAATAATTTTATTGAACCATTACTGCAATTTGAAGTTCAGttttgcttcattactccacatggtggcgctataatcaaatcaATAGGGTAAACCTAAGGTGAAGGTTATTGTTTGtgaaattctgtaaaactgacaccaaaaaaatctatatttcttttaggaatattttaatcttgctatatacagctctggaa

Function

GO: NA

KEGG:

id description
K15596 CDK18, PCTK3; cyclin-dependent kinase 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254512 lncRNA downstream 60953 6317990 ~ 6334437 (-) False G187676
TU254513 lncRNA downstream 60953 6331227 ~ 6334437 (-) True G187676
TU254518 lncRNA downstream 91322 6302766 ~ 6304068 (-) True G187680
TU254516 lncRNA downstream 92812 6300832 ~ 6302578 (-) True G187678
TU254499 lncRNA downstream 121259 6273931 ~ 6274131 (-) True G187669
TU254544 lncRNA upstream 17973 6520369 ~ 6520649 (-) True G187700
TU254612 lncRNA upstream 52919 6555315 ~ 6555877 (-) True G187745
TU254632 lncRNA upstream 255746 6758142 ~ 6758602 (-) True G187763
TU254634 lncRNA upstream 257111 6759507 ~ 6759902 (-) True G187764
TU254640 lncRNA upstream 272772 6775168 ~ 6801448 (-) False G187766
XM_007251403.3 mRNA downstream 16626 6339628 ~ 6378764 (-) True LOC103042703
XM_022682304.1 mRNA downstream 318676 5917506 ~ 6076714 (-) True LOC103023821
XM_007251412.3 mRNA downstream 619245 5771810 ~ 5776145 (-) True c22h1orf50
XM_007251414.3 mRNA downstream 631878 5746890 ~ 5763512 (-) True LOC103046070
XM_007251415.3 mRNA downstream 631878 5749401 ~ 5763512 (-) False LOC103046070
XM_022682310.1 mRNA upstream 310012 6812408 ~ 6828711 (-) False LOC103022878
XM_022682309.1 mRNA upstream 310012 6812408 ~ 6828709 (-) True LOC103022878
XM_022682316.1 mRNA upstream 395595 6897991 ~ 6948954 (-) False sox13
XM_022682317.1 mRNA upstream 395595 6897991 ~ 6944188 (-) True sox13
XM_022682313.1 mRNA upstream 395595 6897991 ~ 6931357 (-) False sox13
XR_002651590.1 other downstream 872470 5518793 ~ 5522920 (-) False svbp
TU253783 other downstream 2615736 3778014 ~ 3779654 (-) False LOC107197677
TU253769 other downstream 2620547 3765863 ~ 3774843 (-) True G187154
TU254659 other upstream 475255 6977651 ~ 6982840 (-) True LOC111195363
TU254656 other upstream 476299 6978695 ~ 6982840 (-) False LOC111195363
TU254662 other upstream 476299 6978695 ~ 6982782 (-) False LOC111195363
TU254657 other upstream 476428 6978824 ~ 6982840 (-) False LOC111195363
TU254880 other upstream 886001 7388397 ~ 7391026 (-) True G187946

Expression Profile