RNA id: XM_022682309.1


Basic Information

Item Value
RNA id XM_022682309.1
length 2579
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC103022878
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 6812408 ~ 6828711 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAACGAGAGCTGGATCCAGTGCCATGTGTTAGTCTATGCTTTACACATTTACTGATAGGTAGAGTCCAGGTAGAAAATGTAGAGTTTAAACTCGGCTATAATTAGGTTTTGACTTTGCAAGTGGtaattatttactgttataGATTGTAGAGTGTTATTTTTGGATTATATTTAGAAGCTTTATGAAGTTGATGGATATTTATGGCGtgtgggctgttttttttttcttttatttgctgAATCTTTAGTTTAGTTCGTAGTTAGTTAATTTAGTTCACCGCTAATGCTCGCCCCTATCCGGCCAGCCCGGGCCAGCGAGTGGCTCCGTAGCGCCCTGGCCGAGCACTTCAGCCCGGACCCCGGCGTGCGCAACGAGGTGGTGGTGCTGGCGCTGGGTGTGGACCAGTACCTGCAGGAGGTGTTCCACCACCTAGCGCTGTGCTGCGGTGGCGGTAGCGGGGATGGGGAGCTGCTGTCCGGCGGGGACTTTAGACTGCTGTGCGGGTGTCTGAGCCTGCGGGAGGAGGAGGTCTGCGCGGGGCTGCCCGCGGCGCTCACCTTCAGGGACTTCCACTCGCGCCTCTGCGGGGTTTTCGCAGCCCGAGCCGGGCCGCCCGGCCTCCGCCTGCCCGTGACGGAGGAGACGGAGCTCGTGGAGCGGGAGATCCGCCGGCGGTGTCCCAGAGTCCGGAGGAGGAGGCGGGTGAGCTTCGACCTGAGTCAGGACCGAGCACAGAGCCGCCGACGAGCCTCAAAACACGAGTCCAGCAGAGAAACAGAGCTGGAGATGCAGCACAAACCATGGCAAGAGCAGGTAGAGATGGAGAACGCCAGTCTGCGGGAGCTGGTGGAGGACCTACGCTCGGCTCTCCAGAGCAGTGATGCCCGCTGCATGGCCCTCGAAGTGGCTCTGCGAAGGGAACGCCTGGCAACGTCCTGCAGACTCTGTTCTACAGAGGGCGCCACTGAAAGACAGAATATCCCTGCCGGAGATGACCCCAGAGTAAAACATCCCAAGAGTGCCGGACGGGACAGCCGGAGGCGCACCAAGGACCTGCTGCGGGAACTGGAGTTGATTCGTGCTTCGCGGGATGGACAGCTGCAGGAGGCGATGAGGTTCAACCAGCGTCTAGAGGAGGAGCTGGCGGTGGCCTACGGAGAGGTCAGTAGGCTAGAGGAGACATTAGGCAACATGAGGAGAGAGAGCGCTGAGATCAAGAAGAGAGCAGAGGAAGCAAGAACTGCTCTGGCTGCGGGACTGAAAAGAGTCAGGGATATCCAGGACCTGGCGCAGCAGGTGGCTCCACTGCAGGAGAAGGTGCAGAACCTCGAGACAGAGCTGGACAGGTTCAGATCCCAGTGCACCTGCAGGGCTTCGTGTGAGCAGAGCCCGGATGCTCCGGTCGATTCTGCTCCTCGGATCCTCCCTACGGGCCGAGACGAGACTTTAATCAGAGGAGAAGAAGGCCTGCAGAGGGCAGTCGAGGGCCGTGCAGCGtctgatgaggaggaggaggagaggagtgcGGAGGATGGGCAGTGCTGTCTGCTGGAGGTGAAGCGGCTGATCAACAGGCTTCATAACTGCTCCAAGGGGTGTCAGAGGACAGCTGTGTGTCACCTGCTTCTGTCCCAGAACTCGACTGGATGTTACGGCGAGCCGTGCGGCTGCTCAGGGTCATGGGAGGGGAAGACGAGGGGCAGACGGCACTACGCTCTCCCAGACGAGAGAGAACTGGATACGgacCTGCAGCTGAAGCCGGAGGAGGTGGACAGATGGACGGTGCAGACGGAACGAGTGCGTCTGTCCTTGCTGGAGGAGAAACAAACTGACACACTGTCCCTCCTGCTGAAGTTACGGGAAAAAAAAGTCTCGAGGAGAGTCCTGGGTAGAATTCTTTTGGACACATTGGATCTGTGCAACAGAAAAGGCCAAGATCCCACCCCTGTTTTTCAGGTGGTGAACACTCTCTGTGAGCAGCTGGTCTCCAATGAGCTCCTGTATGGGGAAGAAGAGGTCACACTGGGGTCTCAGCCCAGAGTGACCCCAGGTCATCGAAACGCCAATAACCCCCTTCTCATCTCCtgctgagagagagactttTCCCTTTTAACTACATTCAGGCTCCAGACTTTAAATAGGGTCCTGCACAGACCACCCATGGGTCACGGGTAGTGAGGAGAGCTGCTGCTAGTTTATACAGTTtccaatccatgtgtgaaaatgatgatctcgtGCTCcatgaatcactctttcacaattccagccccatgaatcctgacactgtcatcttggaatatgcttgtGCCATCAGgcaagaaaaaatccattgatggaataacctggtctatctTCAGCATATTCAggtggtcagctgacctcattctttcagcacatactgttgctgaacctaaacctgaccaactgacCAGGCCAGACCAACTTTGCCGGTTTGTCTCACTGATAAGTGCATTTCTTAAGGCCACACAGCTGTTTAATCCCAATCTCTTGAGTTCCCTTCACATTGTGCAtatggaaatgctcttactttgactattaaacatatccctgagttcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254640 lncRNA downstream 10960 6775168 ~ 6801448 (-) False G187766
TU254641 lncRNA downstream 10960 6775168 ~ 6801448 (-) True G187766
TU254634 lncRNA downstream 52506 6759507 ~ 6759902 (-) True G187764
TU254632 lncRNA downstream 53806 6758142 ~ 6758602 (-) True G187763
TU254612 lncRNA downstream 256531 6555315 ~ 6555877 (-) True G187745
TU254677 lncRNA upstream 56478 6885187 ~ 6886097 (-) True G187787
TU254687 lncRNA upstream 162255 6990964 ~ 6997859 (-) True G187794
XR_002651593.1 lncRNA upstream 277491 7106200 ~ 7130779 (-) False LOC111195364
XR_002651592.1 lncRNA upstream 277491 7106200 ~ 7121571 (-) True LOC111195364
TU254796 lncRNA upstream 324374 7153083 ~ 7155349 (-) True G187875
XM_022682308.1 mRNA downstream 310012 6395390 ~ 6502396 (-) True cdk18
XM_007251403.3 mRNA downstream 433644 6339628 ~ 6378764 (-) True LOC103042703
XM_022682304.1 mRNA downstream 735694 5917506 ~ 6076714 (-) True LOC103023821
XM_007251412.3 mRNA downstream 1036263 5771810 ~ 5776145 (-) True c22h1orf50
XM_007251415.3 mRNA downstream 1048896 5749401 ~ 5763512 (-) False LOC103046070
XM_022682316.1 mRNA upstream 69282 6897991 ~ 6948954 (-) False sox13
XM_022682317.1 mRNA upstream 69282 6897991 ~ 6944188 (-) True sox13
XM_022682313.1 mRNA upstream 69282 6897991 ~ 6931357 (-) False sox13
XM_022682314.1 mRNA upstream 69282 6897991 ~ 6931357 (-) False sox13
XM_022682318.1 mRNA upstream 69282 6897991 ~ 6931357 (-) False sox13
XR_002651590.1 other downstream 1289488 5518793 ~ 5522920 (-) False svbp
TU253783 other downstream 3032754 3778014 ~ 3779654 (-) False LOC107197677
TU253769 other downstream 3037565 3765863 ~ 3774843 (-) True G187154
TU254659 other upstream 148942 6977651 ~ 6982840 (-) True LOC111195363
TU254656 other upstream 149986 6978695 ~ 6982840 (-) False LOC111195363
TU254662 other upstream 149986 6978695 ~ 6982782 (-) False LOC111195363
TU254657 other upstream 150115 6978824 ~ 6982840 (-) False LOC111195363
TU254880 other upstream 559688 7388397 ~ 7391026 (-) True G187946

Expression Profile