RNA id: XM_022682392.1


Basic Information

Item Value
RNA id XM_022682392.1
length 2940
RNA type mRNA
GC content 0.40
exon number 6
gene id sypl2
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12594526 ~ 12612017 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGACATGTTTAACCGACACAAATCTTCCACGAGCAGCGCCACCCGCCCTCTGCCTGCCCAGCACTGACTACTGCTTCCCTCCAGAACTCACTGAAACCGCCCTTTACCCCGAGCAGAGCCGCGTTTATCAGGAGATAATATAAGATATATCAGCATggactttattcagAAACTAATGTCGGGCTTCAGACTTGACCTGAGTCCTGTGAAGGAGCCTCTGGGCTTCATTCGACTGCTGGAGTGGctcTTCACTATCTTTGCCTTTGCCACCACTGGCGGCTATGTTGGTTCCTCCTCCATGACCACCAACTGTCCCAATGCAACATCTAATACAGATATAGTTGCAAACTTTGGCTATCCTTTCAGGCTCCCGAGTCGTCCGTATGAAATGAGCTTTTGCAACGGCACCAAGGTCAATATGTACCTGACGGGTGATTTCTCCTCTTCTGCCgagttctttgtgtgtgtgggtgtcttCGCCTTCCTGTACTGCACCTTTACCCTGATTCTGTACCTGGGATACCAGCACGTTTACAGAGAAACCACCCGAGGACCTATTATTGACCTGATTTTGACTGGGATCTTTGCGTTCATGTGGCTGGTTTCTTCCTCAGCCTGGGGAAAAGGACTGACTGATGTGAAACATGCTACCAGCCCGCAAACGCTGAGCGAACTGTGCAATCCACATTGCTTAATCAAGGAGTATCCTCCAATGGGACGCCTCAATGCTTCTGTGATTTTTGGCTTCCTCAATCTCATCTTGTGGGCGGGTAACTGCTGGTTCATCTACAAGGAGACCCCGTTCCACAAGCCTGCTCATCCACCTCCCAACCCAGAGGATCCTGGTTCAAGCTCCTAAGCGGATCAGCCAGACTCCTCCCTCGCCTTTCAAGCCAATCAAAACTAGAGGATGCCACTGTCGAGTTCACATTGACTCATCCTAAAGTGAAGTTTGATCTTTCACTCGGCCAAACGTTCCAGCTGATGCAGGGCGGCACTGCTTTTACACGCACTGAGCGGAACACACGTTACAGcgttaatgttgattttttttttggtttgtggtTTTACTTGTCAGTCAGTATCGGAACATCTGTTTTGATGGCGTTGTTTGGAACAAGTGTTTTACATCCAGgttctatatataaaaaaaagaaagaataaccCTTAAAATGATTCATTGGTTGATTGAATTTCCTGGAATGTTACTGCAAATTTATATCCCACTCTTACTAATCATTACTTTTGCTTTCTGTTGatgtttttgtcttttcaaCCAGCTGTTCTGTATGtacgtatatatatgtgtgcatGCCCTGAATCTCCCTAACTACGTGGAAAAATGCAGGTGATTAACTATCTGTAAAAAATGTTCTTCAGATCTGCTGTGGGGTTGGACAAAACTTCTCTAAATGAAGGCCATGCTTTATGGCTATGTACCAGTTAATTTTTCAGGTACAAcaaattgttgttttgttgttgcaaaaatggaaaaacactACCACCTTATATATTGCCACGTTAGCcttcacattcacacatatacatatactatattgccaaaagtctTCTTACACAGTCTTTCTCTGTGTAATTAGTTTGAAAATCTAATGCCAGCTTCTGATTCAGGTTCACAAAACTCAGATGTTGCCTTTGAGTGCCTTTGAAATCTTTCTCCAACACAAAGTGccataatgttaatgttaatgtgccTTACGTATCCGTGTGCATTGAGACACTAACATATATTGCTGGAGCCACTTTAGAAGCTTGACTTTATAGTGTAGATGTTTGCACTGTTTGTTCTTCCAAGTGCATCTTTGCATCCGTTATCTAGTTACTTAGGAGAGcttcacacatttttttggaGGGATATCCACATAATTACATAGTTTGTACATATAAACATAGTCAATTGAAGTAGGCTTGGGGTGAAATGATCTAATCTAATTTAGATCCTACCAGCTGAATGCCAGTCCAGGCCTAGCATTAACATCTGTCCGGGGTATCTAATCTGATTGTAAATAGGTAGTAGTACAAAATACAGGCGTAATCCGGACATTTAGACCTCTTGCTTTTTAGTGTGAACACCAAAAGCATGCATTAATGCAAGCTGCATTAACCTCACCACTGCTCCTGccaaaatatactgtacataataaCCGTGAGACTACACGTCCACATCCGGAGTGGTTATGTGGTTTCTCATGATTATGAAATCTGAGAAATCTGATTACAAGCACTTACAAGAGATTCGTTTAACCCCTAACAGGACATTACAcccctaaatcttgaggatttctattcaagcattacaaaaaaaaaaatcctagaaagtatagaaaaatTGTCAaataaatctgcaactgtcaaaatataatgaacaaatatcgtaaaattggctcttttcgAAACTTTCTAAAATTCGATCAATACAAAtcttgaatacaaatcaaacagtttgtCCTCCAAACATCATTTaatgttatgtttgtctattttttacatctattttcaaacatacagaatttggtttattcctgttactgatgtAAAATTATTCAGTGAAGTAGAGAGGAAACTGACAATAATTGGCAAACAGATCACCCAGGACACATGATAATTGGGTAGATTtactacctttttttttttttaaacatcacaaAATTGCATGACTGTATTTCTGTACAGTGATCCATTTCAATCCAAGCCACTCTACaaacatttaattacagtaaataaattgaaaatctgtggaaaTCAGAATTCCCCTTTCAAAATTTAGCCATGCCACACTCGAAAATTAAAAGCACTCAATACGTCAGGGACAGATCACCAAATCAAAACTAACACTGTTGAACTGTTTAGATTTGATTGGTTGGTGATGAATAACTTTAAGCCAAACTGTTCGCTTCAGcacttcaggaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256610 lncRNA downstream 53914 12538250 ~ 12540612 (-) True G189319
TU256605 lncRNA downstream 61193 12529144 ~ 12533333 (-) True G189317
TU256606 lncRNA downstream 61193 12529464 ~ 12533333 (-) False G189317
TU256603 lncRNA downstream 65675 12528570 ~ 12528851 (-) True G189316
TU256602 lncRNA downstream 77802 12515941 ~ 12516724 (-) False G189315
TU256642 lncRNA upstream 614 12612631 ~ 12613163 (-) False LOC111195455
TU256661 lncRNA upstream 37294 12649311 ~ 12651090 (-) True G189344
TU256641 lncRNA upstream 39648 12651665 ~ 12714032 (-) True LOC111195455
TU256663 lncRNA upstream 41043 12653060 ~ 12658764 (-) True G189345
TU256666 lncRNA upstream 92251 12704268 ~ 12704712 (-) True G189348
XM_022682391.1 mRNA downstream 2433 12574219 ~ 12592093 (-) True atxn7l2
XM_007254541.3 mRNA downstream 21439 12566871 ~ 12573087 (-) True LOC103028365
XM_007254537.3 mRNA downstream 67947 12518881 ~ 12526579 (-) True ldlrad2
XM_007254536.3 mRNA downstream 82065 12508912 ~ 12512461 (-) True chchd4
XM_022682384.1 mRNA downstream 120983 12396596 ~ 12473543 (-) True LOC103039006
XM_022682860.1 mRNA upstream 594 12612611 ~ 12613869 (-) False LOC111195455
XM_022682859.1 mRNA upstream 594 12612611 ~ 12613860 (-) False LOC111195455
XM_007254543.3 mRNA upstream 50555 12662572 ~ 12666219 (-) True LOC103029205
XM_015607188.2 mRNA upstream 61349 12673366 ~ 12687118 (-) True gpr61
XM_007254548.3 mRNA upstream 102471 12714488 ~ 12756183 (-) True LOC103030591
TU256382 other downstream 249144 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 550233 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 1603132 10990817 ~ 10991394 (-) True G188898
TU255454 other downstream 2639719 9951985 ~ 9954807 (-) False LOC111195437
TU254880 other downstream 5203500 7388397 ~ 7391026 (-) True G187946
TU256647 other upstream 2895 12614912 ~ 12619566 (-) True G189335
XR_002651608.1 other upstream 450918 13062935 ~ 13076516 (-) False tsen2
TU257791 other upstream 2706627 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 2819650 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 3790774 16402791 ~ 16460928 (-) True G190405

Expression Profile