RNA id: XM_022682427.1


Basic Information

Item Value
RNA id XM_022682427.1
length 3361
RNA type mRNA
GC content 0.45
exon number 4
gene id suox
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14668007 ~ 14677478 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGATGCAGCTCCGAGGGAAGCCGCcgcgtgcagcagcagcagttcagacaCTGAGGATAGACAGCGGGATGAGCAGTGCAATGCAGCAGCTCCGGCACTGCCACGGACTCGCCCGGGTCCTGCTGCCTGGCGCTCACAGTGCACAGCGGCTAAAGAGTAACATCCCTCTGGCGTCAGCATGTTCTGGACTACTGTCTCTTCGTTGGGGAAGCTACAGCAGCGATAACAGCCACAGAGGACACAACTACTACAACACCAGGGTTCCAAAGTTCAGATATGTATTGACTGGGCTGGTGGCTGGAACTGGAGCTGTGCTGGCCTATGGATTTCATCACAGTAAGCCTGAGCGAGCGGCTGCCTCAGTGACTCAGACATCCTCCCTGCCTGTCTACACCCAGGACGAGGTTTCGAAACATTCTTCTTTGGATGAAGGCATATGGGTCACGTACAAGGGAAGCGTTTATGATATCACCAAGTTCGTATCCATGCACCCCGGAGGAGACAAAATCCTGCTTGCTGCTGGTCGAGCTCTGGAGCCATTCTGGGCACTATATGCCGTTCATGGACAAGAACATGTTCTGGAAATTCTGTCAGAGTACAAGGTTGGAGTTCTTAGACTGGAGGACTGCAAGAAGCAGGAACTTTCTAATCCTGCTGATCCCTATTCTACCGACCCGCCTCGGCATCCTGCTCTTGTCATCAACAGCTCAAAACCCTTTAACGGTGAACCTCCTCCTGCCCTCCTCACGGACAACTACATCACCCCCTCTGCTCTGTTCTTCAAACGCAACCATCTTCCCGTTCCCCAGATAGATCCCGACAAGTACAGGCTACAGATAGAAGGCCTCCCTGGAGGTGCAGTGTCTTTGTCCTTGGAAGATCTTAAGACTCGCTTCCCTAAGCACACCGTCACCGCAACTCTTCAGTGTGCCGGAAACCGGCGGTCTGACATGAACAAGGTCAAGCAGGTAAAAGGGTTGAACTGGGGAGTTGCAGCTATAAGCAACGCCACATGGTCAGGCGCAAGCCTACGAGACGTTCTTTGCCACTATGGCTTTGGACCAGAAGTGGCGGCTAAGGCTCAGCATGTGCAGTTTGAAGGTTTAGACAGGGATGTAACTGGTACATCCTATGGAGCGTCCATCCCTCTAAACAAGGCAGTGAGCGAAGAGGGAGATGTCCTTCTGGCGTATGAAATGAATGGGGAGGATCTCCCACAAGACCACGGGTACCCTGTTCGAGTGGTTGTCCCTGGAGTAGTTGGAGCTCGAAATGTCAAATGGCTTGGTAAGATAGTCGTCAGTGAGGAAGAGAGTCAGAGTCACTGGCAGCAGAATGACTACAAGGGTTTCTCTCCCAGCATTGATTGGGACACGGTGGACTATAAATCAGCACCGGCCATCCAGGAGCTTCCTGTGCAGTCTGCAATCACTCAGCCTGCAGAGGGAGCGGTGGTGGACAGAGACATGGAGGAGGTGACTGTGAAGGGTTATGCTTGGAGCGGTGGAGGACGGGAGGTGGTAAGAGTGGACGTTTCGCTGGATGGAGGTAAGACGTGGCATGTGGCTGAACTCCAGAGTGGCGAGAAAGGACAACAGCCTgcaccacctcctccacctggGCGAGCATGGGCATGGAAACTCTGGGAGATAACAATCCCTCTGCCGGAAGGAGCTCAGGAGCTTGAACTTGTTTGCAAGGCAGTTGACAGTAGCTACAACAGTCAGCCAGACTCGATGGCGCCCATTTGGAACTTGAGGGGTGTGCTCAGCAATGCCTGGCATCGAGTGAAGGTGAATGTGAAGTGAACACAAGGTTCTAGAAGGAATGGAATGAATAAATACCCAAAGAGACATTTACTGGTTTTATGGTAACTCAGGAACGGAAGGATGATACatctgttgtatttattgtagacTTGCCCGGCCAGTGTTTAGACATTCTACCCCGATCTTGGCCATGTATGCCAAACTTAGGTAAGCGCCAGTTGCATTATGAAATCGCTATATTTGCGCACAAATTATCTATTTTTGACTGCTGAGTTTACACAGTGTTAAATGGCTTACCCAATCTACAATCCTACAATCATAGCTGGACATATTTTGCAAATACTGACCTTCCTAAACTAATCCTAAAGATTAGTGGACGACTCAACCTGTGTTGACTGTAAACATGTGggaatattttttctgtttacctGGAAGCTAGTCAGGTGGTCTTATGGTCTTaagattttataatttttaatggAAATGCACtgcttcaaatgtttttttgagcGATGTCAAAaagaagcactttttttttttttagacgttTTTTAGAGATGAGTATAAAGAATCCTTTTAAGGTctaaagcagtggttctcaaactgtggtataTCACTGTGTGTTACTGTTTGTATGCAAAGCATCAAAATGTGGTACTCCCGATGATGTCAGAAAGtggtattacatttttatttaacccATTAGACCTACACTTCAGTTCTTTACAACATTAGTTTTATAGGTCCTGTGGGATCAAGGAATTCACACTCCTGTTGTTTTCCTTAAGCTTTCGGAGATGTCACAGTAGGCATGACTACATCCACCACTTACATCATCAAATATTCTACCATGTTAGCTTGCAGACTGCAAAAGCAAGCAAGTAAGCTagagagatatatatttttctcccaaattaaatTGTCCCTGTCACTAATAATGTACATCCTTTGAAATGATTTGTAGGCAACACTTGGAAGATTGAGTGTGATTATGCGTGGTACGTGGTTTGAAAACCACTAGAAAAAAAGAACCTTCATGTGATCAACAGGTGCTTCACACTTGCACATCTCTGTTACAACCATAATTGGTAGGATTCTCCAGGGAACCATTGGTTCCTATATTGCATTgctcaaaaaaacatttgaagcaCACTTAATATTTTAAGGGCTAAGTAAACTATTGGTATTTCAGAAATAAGATTTGAAGGAGTGTATAATGTAATCACTTGTATTTATCACTTCAGTGGTACCTGGACCTGAACCCAAGGTTCAGGATGTCGTTAAGCACAGAACgcttacacattttttttcttttcagtggtCCAGATATTACAGGTTCCATCTGTTTTAGCACAAAAGGTGTAAAACCAATACCACTATAGTGATTATGTATGTTGCTTAAACTGTAAAAGGACAGCATTTATGAGCTCTCATAAATTAAACATAAGTGCTTCGTTTACCTTACTTTCATCATGTTTCAATGatctggaatgttttttttttatcataggaCTGTTTTGATTGACATGCtctattttattttggtttcatttgctgaaatatttataataaaatatttaacataagaTAAA

Function

GO: NA

KEGG:

id description
K00387 SUOX; sulfite oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257328 lncRNA downstream 71433 14594996 ~ 14596574 (-) True G189808
TU257323 lncRNA downstream 121362 14545906 ~ 14546645 (-) True G189803
TU257307 lncRNA downstream 244337 14420713 ~ 14423670 (-) True G189789
TU257295 lncRNA downstream 342710 14324804 ~ 14325297 (-) True G189779
TU257294 lncRNA downstream 356965 14310305 ~ 14311042 (-) True G189778
TU257334 lncRNA upstream 30257 14707735 ~ 14709526 (-) True G189814
TU257344 lncRNA upstream 35405 14712883 ~ 14713733 (-) True G189821
TU257346 lncRNA upstream 39958 14717436 ~ 14799628 (-) True G189823
TU257357 lncRNA upstream 82310 14759788 ~ 14760374 (-) True G189834
TU257360 lncRNA upstream 103070 14780548 ~ 14782900 (-) True G189835
XM_022682435.1 mRNA downstream 8060 14656245 ~ 14659947 (-) True LOC103046666
XM_022682436.1 mRNA downstream 13673 14647806 ~ 14654334 (-) True LOC111195382
XM_007248305.3 mRNA downstream 29657 14624822 ~ 14638350 (-) False prph
XM_007248304.3 mRNA downstream 29659 14624822 ~ 14638348 (-) True prph
XM_007248303.3 mRNA downstream 46595 14610951 ~ 14621412 (-) True tamm41
XM_022682431.1 mRNA upstream 2449 14679927 ~ 14694115 (-) True mcrs1
XM_007248308.3 mRNA upstream 42907 14720385 ~ 14728314 (-) True dnajc14
XM_022682440.1 mRNA upstream 76898 14754376 ~ 14764355 (-) False LOC103038772
XM_022682439.1 mRNA upstream 76898 14754376 ~ 14763654 (-) False LOC103038772
XM_007248309.2 mRNA upstream 76898 14754376 ~ 14761942 (-) True LOC103038772
XR_002651608.1 other downstream 1591491 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 2048441 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 2322625 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 2623714 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 3676613 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 641166 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 754189 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 1725313 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 2156372 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 2511187 17188665 ~ 17193747 (-) False irf6

Expression Profile