RNA id: XM_022682436.1


Basic Information

Item Value
RNA id XM_022682436.1
length 1689
RNA type mRNA
GC content 0.52
exon number 5
gene id LOC111195382
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14647806 ~ 14654334 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTCAAACCATCACCTCACAACGGATTCCTAACGGTCTTAGCGTGAGAGCTGTTTTACGAAGTTTTAACGAAGTTTTTACGCAGTTAAAGAAGTTGTAGTTCACTCCTTCCACATCAGTATGCGTGAGTGTATCTCCATCCACGTGGGCCAGGCTGGTGTCCAGATTGGAAATGCCTGCTGGGAGCTGTACTGTCTTGAGCATGGCATTCAGCCGGATGGTCAGATGCCCAGTGACAAGACCATCGGCGGAGGGGACGACTCCTTCAACACCTTTTTCAGCGAAACAGGAGCTGGCAAGCACGTCCCCAGAGCAGTTGTGGACCTAGAGCCCACTGTGATTGACGAGGTCCGTACCGGCACTTACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACTGGAAAGGAAGATGCTGCCAACAACTACGCTCGTGGGCATTACACCATCGGCAAGGAAATCATCGACCTGGTTCTCGACAGGATCCGCAAACTGACTGACCAGTGCACTGGTCTCCAGGGCTTCCTGGTGTTCCACAGCTTTGGAGGTGGTACTGGTTCTGGGTTCACCTCCTTGCTGATGGAGCGCCTCTCCGTCGACTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCTCCACAGGTGTCCACCGCTGTGGTGGAGCCCTACAACGCTATCCTGACCACCCACACTACCCTCGAGCACTCCGACTGCGCTTTCATGGTGGACAACGAGGCCATCTACGACATCTGCCGTAGGAACCTCGATATCGAGCGTCCTACCTACACCAACCTCAACAGGCTGATCAGCCAGATTGTGTCTTCCATCACCGCCTCCCTCCGATTCGATGGTGCCCTCAATGTTGATCTGACCGAGTTCCAGACCAACTTGGTGCCCTACCCTCGTATCCACTTCCCACTGGCCACCTACGCCCCGGTTATCTCTGCTGAAAAAGCTTACCACGAGCAGCTTACTGTTGCAGAGATCACCAATGCTTGCTTTGAGCCTGCAAATCAGATGGTGAAATGTGATCCACGTCACGGCAAGTACATGGCCTGCTGCCTGCTGTACCGTGGTGACGTTGTACCCAAAGACGTCAACGCCGCCATTGCCACCATCAAGACCAAGCGATCCATCCAATTCGTGGACTGGTGCCCAACTGGTTTCAAGGTTGGTATCAACTACCAGCCCCCCACTGTGGTGCCCGGCGGTGACCTGGCCAAAGTCCAAAGAGCCGTGTGCATGCTAAGCAACACCACAGCTATCGCAGAGGCCTGGGCCAGGCTCGACCACAAGTTCGACCTGATGTACGCCAAGCGTGCCTTCGTGCACTGGTACGTAGGAGAGGGTATGGAGGAGGGAGAGTTCTCTGAGGCCAGAGAGGATATGGCGGCTCTGGAGAAGGATTATGAGGAGGTTGGTGCCGACAGCCTGGAGGGAGAAGATGAAGGAGAAGAATATTAAATGTGAATTAAagaggacatgaaacatttcagtttgtacaagttttctaagggattaaatataatggaatttatttgggggggatttttttatataaaatgtttacagactaaattataatatatttatgtttgttacgtttgCGCTAGGGTGCCGCCATGTTGCCCatgcagcactggtgacgtcacgaggttggttggtgaAGAGCCCAGGTACATAACTA

Function

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257328 lncRNA downstream 51232 14594996 ~ 14596574 (-) True G189808
TU257323 lncRNA downstream 101161 14545906 ~ 14546645 (-) True G189803
TU257307 lncRNA downstream 224136 14420713 ~ 14423670 (-) True G189789
TU257295 lncRNA downstream 322509 14324804 ~ 14325297 (-) True G189779
TU257294 lncRNA downstream 336764 14310305 ~ 14311042 (-) True G189778
TU257334 lncRNA upstream 53401 14707735 ~ 14709526 (-) True G189814
TU257344 lncRNA upstream 58549 14712883 ~ 14713733 (-) True G189821
TU257346 lncRNA upstream 63102 14717436 ~ 14799628 (-) True G189823
TU257357 lncRNA upstream 105454 14759788 ~ 14760374 (-) True G189834
TU257360 lncRNA upstream 126214 14780548 ~ 14782900 (-) True G189835
XM_007248305.3 mRNA downstream 9456 14624822 ~ 14638350 (-) False prph
XM_007248304.3 mRNA downstream 9458 14624822 ~ 14638348 (-) True prph
XM_007248303.3 mRNA downstream 26394 14610951 ~ 14621412 (-) True tamm41
XM_015605609.2 mRNA downstream 38182 14549146 ~ 14609624 (-) True vgll4
XM_007248302.3 mRNA downstream 60509 14549146 ~ 14587297 (-) False vgll4
XM_022682435.1 mRNA upstream 1911 14656245 ~ 14659947 (-) True LOC103046666
XM_022682427.1 mRNA upstream 13673 14668007 ~ 14677478 (-) True suox
XM_022682431.1 mRNA upstream 25593 14679927 ~ 14694115 (-) True mcrs1
XM_007248308.3 mRNA upstream 66051 14720385 ~ 14728314 (-) True dnajc14
XM_022682440.1 mRNA upstream 100042 14754376 ~ 14764355 (-) False LOC103038772
XR_002651608.1 other downstream 1571290 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 2028240 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 2302424 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 2603513 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 3656412 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 664310 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 777333 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 1748457 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 2179516 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 2534331 17188665 ~ 17193747 (-) False irf6

Expression Profile