RNA id: XM_022682441.1


Basic Information

Item Value
RNA id XM_022682441.1
length 6592
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC103025355
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15296659 ~ 15305207 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgaaagtttttttttccttacagcaaaaaaaatacgtttttggAGAAATCCAGACAGACGGGTTCAGAAGGACTGTCTGAGGACAAGCAATCAGCTTCACTCAAACCTGCCGTCTCTGAGATGCGCGACTCAGAAGAAGggaTAAATAAGGAGGAAAAAAGACCCTCAGCAGTTTCAGAGCCAACCCAGGAGATTGAAGCATCTCATTCATCCTCCACAGAGACCAAGAACCCTCATCCATCTCAGGCTCTTTCCACAGAGATGGAGCAGAAGGAGGGCGAGGAAGTAGATCACAGAGAAACTGAGCTGGCCTGGCCTCAGAAAAGCCCAGAGCACCCTGCTGAGCCGGAGGAGTCGGCCGACAGGAGAGAACAGCCTAACCCTCACTTAATTCCTGGCAGCCTTGTGAAGGAAAGCTCCGTTAGTCCTTTACGTGAGGCTGAGCGAGCGTCCTCTGTTGTGTCACCCGAATTAGAAGCAGAGGGGGATCCTGACTTTGAGGACGATGCTCCGGGCGGGACTGGAAACCACCCTTGCCAGCATTGCGAGCGGCATTTCTCCACCAAACAAGGTCTGGAGCGCCACGTTCACATCCACACCATCGCAAACCACCAGACGCACACGTTCAAGTGCAAATACTGCACCAAGCCCTTCGGCTCGCAGGTAGGCAGGCGTAGACACGAGAGACGGCACGAAAACAGGAGTAAAACTCTGAAAAGGCCGAGTTCTTCTCTTGCAGGAACAGCTTTTCCCCTGAGTCCCTCCAGGCTTAACGACTCTCCTCCTACCTCCGATTGTGTAACGTCTCCGAGCCCTACCATCATCATGACTTCTCAGAACGGTCCTCCTCAGCCAGGCTCTGATACTAAGGATGCTGGAGCAGACCCTGAACACACCTTCGTCTTAGATGAAAATGGGGAATCAAAGGAATTGCACCCTTGCAAATATTGCAACAAGGCTTTCGGCACGCATACAAACATGCGCAGGCATCAGCGCAGGATTCACGAACGTCACCTTATGCCGAAAGGTGTTCGCAGGAAAGGTATTCTCCTACAGGACATGCCATCCCAACAACATCCAGAGGAAGAAGGTCCGGTCACAGCACAGTCACTCCAGAAGGCGTCGCCAAACGCCAGCCCACCGCCTGTCTACGTACCCAGTGTAGACACAGAGGATGAGGGCGAACGAGAAGAGGGCATGGTCAACATTTCCAAAAACATCTCAGAGAACCTCAGCCTTTACATAGATGGCAAGATCTTGTCCACAAACACTGTCAGCACCTGTGAAGTGATCGAGGTCGACTCGAGCACTGCTGCACTGTTCGGATTAGACACGGTCATACTGAATCCCAACCAGATAAGCCAGGCACTTAAAGTTGAAACGCAACCTTCGCCTGTGAAAGAGGCTTCGGCTAGTCCGAAAAGGAGAACTTCCACACCGCCGCTTCTTCCTGCAGTGAAAATGGAATCTGAAACTCACCTGCTTTCGTCTGCTGGCACTTCGTCCTGCACTTCCTCTCAATCGCCTTTATTAGTTGGCACCGTCCTCCCACAGTCCACAGAGACGTTGGCGTTCCAAAAGGAGAAGACCGTTTATCTTTCTCCCAAATTGAAACAGCTCCTGCAGACCCAGGACAGTCAGAAACCAGCTCTTACTCTAATTGCAGATAGCCATAGATTGACTACTCCACTTTCCGTAACCTCCCTCCCTGCTGCTCAAGGCAGATTCAAAAGAAGGACCGCTTCCCCTCCGACTCCTGCTCAAAGCAGCTCTTCGCTGAGCCCTGAAAGCTGTTCAAACATTGAAACGGGGGATTCATTTACGCTTAAGGTGCCAAAGGTTGAAAGCCACTGTACGGCATCCTGGAGTTCACCCAGCAGTGATCAGAGGGACTCGGTGAGTCCCTGTGGAAAGGACTGGGCTGCTTCCGTAAGTGGAGGCAACTCTTGCAATCAGCTGCCTCTTGACCTTTCTAGTGCAGTTAGCAAAAAAGACAGCAGGACCTCTAGTAAAGCGTCTGGAGAATCTGTGCTGGATTTAAGCCTGCATCGTAAGGGTGCGGGTGCACCAACAGCTCAACATGGAATTTCTTTAGCGCCTCATGTTAAGAGAAAGAAGCCTAACACCAGCATGTTGGAGAAAGTTCTTATGAATGAGTACGCTGGCCTAAGTGTAGCAGGAGAGGAAGGTTCTACAAGCCTCGACAGTCCAGACGCCGCCAACTCCTctccaggcagtgatgcaggcGTATCCCCGGCTAGTCCCTCTTCCAATTCAGAAAACCTTCCTTGTGAAAATCCTTGTGAATCTTCGCCTCCTCCTTCCTTGACTCCCGTTACTATTAATCCTTCTTCTCCATCGTCCTCAAGCCTGGCATCCTCAACGCCTCCTCCTCCAGTTCTGCCATCTGTCCCTTCACCTCCACCTCTAACTTCTCGCCAATCTCTGGACTCTTTTCCCAAACTCTCTCCCAAGCCTATTGACAGTCCCCTAGAGGAGGAAATGTCCAAATCCTCGGCAGAAGAAACAAGCCATGATCTCAACATTAAAGACTTCAACCAAACTGCTAAGCAGTTAGACCCCATGACATATGCACTGCCTCAAAGTCCTCAGGGCACAAAAAGACATTATAAAGCAGATTCCTTTTCAAAATCTGGAACACTACATAAGGGCTCCCCCATAAAAACTGCAGATTATGCGGTTTCCTCCTGTGAAAAGTATTCTGACTCTGAAGACAGCCAAAGTAATTCCTTTGATGAAAGTTTCCCTCCAGACCTCaacagcattaaaactgagggacGCAAGCAACCTCAATCCTCTCATTCTCCTGTACTCTCCACTTCTTCTAATTCTAATAAAGAATcaccctcttcttcttctcctcctttttcttcttACAAAGTAGAGGAAGATTCCCAGTCCTCTACTGCAGGGCCATCAGCTGATGATATGGTGGTCAATAATGAAACTGTTACGATTGGAAAGGTGGAAAGTGAAATTGCAGCCAGCACTGAAGATGTTTCCTCTACTGGAGGAAACGCTGCAGTAAAAACTTTAGACTCTGCAGAGACGGAAACTGAAACATCAGAGCAGGACACATTTACCAAGAGCTTTGTGTGCAACGTCTGTGAGCAGCCTTTCCACTCGATTAAAGAACTCAGCAGCCACATCATGCAGCATGCCGTCGAATGGCCTTTCAAATGTGAATTCTGTGtgcaattatttcaaaattctTCAGCTCTTCTGGAGCATCGCTCCTCTCTCCACGGTGTTGGGAAAATTTACATTTGCTCTGTCTGTTCAAAAGAGTTTGCTTACCTTTGCAACCTTCAGCAACACCAGAGCGATCTGCACCCCGGACAGAGCTGTGCTCATACATCTGTAGAAAACGGCAAGCTGAGACCGCAGAATTACACAGATGCTGCAAATATGCAGGCAATTATTGAGAGAAATTCCTTGCATTCAACCACTGACACATCTGTGGATGATGACCCTCAGGATTCCTccgaggtgtgtagtgataaagacattaaaaaggaAAACGGTGATGATCTAACCGGACAAGAGGATCCCACAGAAGAGCTGTAcactacaataaaaataatggcCTCAGAGGCCGGAAAGCCTAAAGGCCCAGATGTGCGTCTCGGCATTAATCAACACTACCCCAGCTTTAAGCCTCCACCCTTCCCCTACCACAACCGAACATCTGCTGCCAACGTAGCATCTGCAACCAACTTCACCACACACAACATCCCTCAAACGTTTAGCACGGCCATCAGGTGCACAAAGTGTGGTAACAGCTTCGACAACATGCCCGAACTCCACAAACACATCTTAGCCTGTGCTAATGCTAGTGATAAGAGGCGCTACACTCCCAAGAAAAACCCCATTCCTCTGAAGCAGATCGTGAAGAAGCCTCAGAATGGTGTCATGCTGCTGTCAACTGCTGCAACAGCTGCCGGCGGTCAAAATGCCTTCCGCAGGATGGGTCAACCCAAGCGGCTCAACTTCAACCAGGAGATACCCGCCAAGATGAAGATGACCGCCTTGAACAAAAAGAAGaaccagcttgtccagaaggCGATATCTCAGAAGAACAAGACTGCCGCTGCTGCGTCTGCAAAGAAGGCTTCTGTACAAGTTAAGGAGGAGCAGCAACCAAGCAGCGTCTGCCCGTACTGCAATCGCGAATATACGTACGCTGCCAGCCTTGCGAAGCATGTCGCAGGCAGCTGTCCTCAGAAACCAGCTGctaagaaaaagcaaaaaacaccaACCCTCAAAGACAAAAATGTGAATCTTCGGACTCGAGTCACGGACTCTGAAATCAAACAAGAACCTGAGGCCAACCAGGTCACGACCGGGCGTCCTCAGGGGAAATCACCGCGGAACACAGAAACCGTAGAGATTGAGTTGGCTACACCAGCTAAGGAAGGGAAGGAAAGCAAAGGAAAAGCGGGGACGTCTCAGGCTCGTTCCTCCAAAAGACCTGCAGCCTCTACTGCCTCCAGTAACACAGACAACTCAGCACCCAAAAGCAAGAAGGGCAGAAAGAGTGGCAGCAGCGTTCAGCCCGTAACCCCGCCCTCCTCATCGCCGCCTGCTGTTGTGAATGAGCCTGCGGCACGGACAACCACAAAAACTCCACGTGTTacaaaagataaagaaaaaggtaaagagaaagagaaagacactgTGGTCCCAAAGAAGGAGACTGAAACCAAATCGCAGGTCCAGACCAAGAAAGAGGAGCGTTTCTCTAAGAGGACGCCGCGGGAGCGAGTGGGCGGTCCTGTCACCCGCAGTCTGCAGAGTTCCAGCGGGGAGGTGAAGAACGAAGACCAGCATAAAGAACCTGGGGATTAAAAGgaATCCCTGTGGAAGGACTGGAGGTAAAGCGCAGTGGACTGACTGTAGTTAGTGGCTGCAGGATTTGCTGGCGAGAGAAGTGCTGGTGAACCGGATCTGGTTGAATTATTCGATTTATTAGGGTCGAACCAGATTACCGATAACGGAACAGGAGCATGTtctaaatgcacttttctataAAACGAGACGAGCCTTTTTTTGTTGGACATgcaaaccccccaaaaaacaatggaaaaaaaagaggactGTAGATGATTCTGATGAtgatctctgtgtctcttaaagTAGAGGTGGGTAATCCGGTCCAATTGTGATTGGGTTCCATCTACTTGGACAGAACTGGATCCGGATCTCCCTCCTCTAAATCTAAAGTCTAATATTATAtctaatatttctttatttacaataaataagtaACAGCCCCGTGTTTCCCTTAAGAGTGATGAGGCTGATTGTATTGCAACAGGCAATCATACATCAGTTGTTAACACAACCAACCGTTTTTGGTATTCCTtacttatttctttctctctttttttttttcttcgttttctCGTCCTTTGTGTTTTGTGAACGTTCTAGCGTTCACACTCACCAGTCTCACTTTTACTGCATGTGCTCTGTATACAGTATAGCTAGACTGACCCTCTTTCGTGTCGATACTCTACATACTCTACTTCTGACCTGCGCTTCTTCTTTTTACCGATGCAAAacgaaagaaaatatatatatggatatttaatttaatgtaatgctgCATAAGGAATGCAATATTTGTTAATGAAGCTCTTGCATCGTTTTTCCTCTTGTGTTGAGTTTTGCGTGAACACAGTGCTCCTCTGAAAGCTGTTTGATACAGTGGGAGGATGACATGGGCGAGTGGGCGACTGACGGTGTTCTGTATGATATTATCTTATCCCTGTCTGAAAAAGCCAACCCATGAGCCGTGTGTCGGTTTTGCTGTCAATAACTTTTTATAATCCGTAGCATTCACTTTACAGCAGGACTGCTGGCCATTCTAactacactaaaacacacatacaacccagcaaaacactgttttttgtttttctcctgAGAATAAGCGCTGGAATATATCGTGCCATGTTGAAACTTCACGTTAAAAGTCGCGTAAGCATTATGTCTTTATGCTTGACTGATTAGCACCTCTTTTATTGCCAATTTATATGAAATTCACTTTACATAGGTTACATCTTGccttgaaaatgaatgaaaaccatGAAAACTGTATTATTTGGGTTGGAAATACctattttttcctctttgttTTGATGTAAAGCTTTTGTAAAATTCTTGTTTTCCTCCATTATTTCGAGTAGAGCAGCCAAAACGGCGGTTTTCAGATGTCAGAGGCTGATTGCTGACATCAAGGGTGGATTATGACGTAATGAAAACCAGAGgggataatgatgatgatgatgttttagTTTATGAATTTTTCAGTCAAATTCCATTGAATTCCTCAGTTTGGGAGAAGTAGGTCTCGAGGTATGGTGTGAAGtttatattattcatatttaactTGCCAAGCCTATAATAGGAATGGTTGTGGTTATCCAAATATTCCAGCAGATCTGTGTTCAGTTCCCTGTCTGTGTTCATGGGTATTCAGAATAAAGTCATGTGTTAGCATGGCTtctgtacatattttttatgtacataTGTAAATCTTTCCCCAAATAAACCGTTATAAATAGCA

Function

GO: NA

KEGG:

id description
K11432 PRDM2, RIZ; [histone H3]-lysine9 N-trimethyltransferase PRDM2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257566 lncRNA downstream 11944 15209617 ~ 15284715 (-) True G190001
TU257569 lncRNA downstream 79309 15215638 ~ 15217350 (-) True G190004
TU257549 lncRNA downstream 93893 15198426 ~ 15202766 (-) True G189987
TU257514 lncRNA downstream 99600 15059956 ~ 15197059 (-) True G189958
TU257512 lncRNA downstream 161233 15101728 ~ 15135426 (-) True G189956
TU257794 lncRNA upstream 48230 15353437 ~ 15354632 (-) True G190171
TU257807 lncRNA upstream 82888 15388095 ~ 15451570 (-) True G190183
TU257841 lncRNA upstream 251314 15556521 ~ 15569271 (-) True G190199
TU257848 lncRNA upstream 292120 15597327 ~ 15605977 (-) False G190204
TU257846 lncRNA upstream 300509 15605716 ~ 15607905 (-) True G190204
XM_022682834.1 mRNA downstream 14080 15236982 ~ 15282579 (-) True LOC111195446
XM_022682433.1 mRNA downstream 133898 15134775 ~ 15162761 (-) True LOC107197607
XM_022682426.1 mRNA downstream 166190 15103637 ~ 15130469 (-) False LOC103042998
XM_022682422.1 mRNA downstream 166195 15100475 ~ 15130464 (-) True LOC103042998
XM_007239905.3 mRNA upstream 13436 15318643 ~ 15322175 (-) True LOC103024926
XM_022682443.1 mRNA upstream 53968 15359175 ~ 15407969 (-) False LOC103026384
XM_022682442.1 mRNA upstream 53968 15359175 ~ 15407969 (-) True LOC103026384
XM_022682835.1 mRNA upstream 104000 15409207 ~ 15466584 (-) True LOC103026676
XM_022682447.1 mRNA upstream 163006 15468213 ~ 15503648 (-) True LOC103034615
XR_002651608.1 other downstream 2220143 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 2677093 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 2951277 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 3252366 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 4305265 10990817 ~ 10991394 (-) True G188898
TU257791 other upstream 13437 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 126460 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 1097584 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 1528643 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 1883458 17188665 ~ 17193747 (-) False irf6

Expression Profile