RNA id: XM_022682444.1


Basic Information

Item Value
RNA id XM_022682444.1
length 3916
RNA type mRNA
GC content 0.47
exon number 2
gene id rbm12
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15495710 ~ 15504391 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGAGAGTTGATTTTAAATGCTTGCCGTCAAGATTGGCTTGGGTTACGTCCACAACTAGTAACGAAGCGCCGCTAATTGTACAGGTGTGTCTTATAGCACCTCAGCATGGCTGTGGTCATCCGTTTGCAGGGTCTACCCATTGTGGCGGGCACCATGGACATTCGCCATTTCTTCTCCGGACTGACCATCCCAGATGGTGGTGTGCATATTGTAGGGGGCGAACACGGCGAAGCTTTTATCGTGTTCGCTACTGACGAAGATGCAAGACTCGGAATGATGCGCACAGGGGGGGCAATCAAAGGATCCAAAGTGTCGCTGTTGCTGAGTAGCAAAACCGAGATGCAGAACATGATAGAGTTGAGCCGCAGGCGCTTTGAAAGCGGTAGCGTAGAAGTTGCTGCAGGAAATGGCAACAGATCAGGGCCACCTAGTTCTACAGGGGGAAGTGGAAGGGGTAGCTTGCCAACCACTGCACAAGGTTTTAgtaacaccacatcaaccacagCCACCACAGCTGTCTCCTCTAACGAGCCTGTAAACAATAAAGCTGTCCCTACTTTTGCCTCGACAACCATGGGCAACATGCCTGCAAACTTTAACAACTTCAGCAGCCCGAGTCTTAGTGTAGGCTCCACTATGACAACTGCCATGTCCTCCTTGAGTTCTGTACCTCCTCCCATACCCCCCTTGCCCTCTATGCCAACATTACCACCCATGCCGCCAATGCCAGTTCCACCACCAGTGTCCGCATTACCCCCAGTACCAACTGTTAATCCTCTCAGCTCAGTGCCTCCAGTACCGCCAATGGCTCACATGCAGCACATATCTGGTATTCCTCCTTTTAATCCTGGTGTACCTCCACCAGTTGGCCCTATGACTGGTGGTCTTGGGCATTCAGGACCACCGCTCTTAGGAAACCCAAATCCAATATTTCTTAACCCATTGAACCCCCTAAATCCACTCAGTCTCCAAGCACATTTGAAATCGGCTGTGGGAAGCCCAGACGAGTTGTTCATTCAGCTCCAAGGCCTTCCTTTCAATGCGTCCGAAATTGAAATTAGAGATCTTTTCCACGGGCTTGCAGTCGACTCTATTAGGATACTCCGGGACAATATGGGTAGAAGCAGCGGCAGGGCTTTGGTTAGGTTCTTCTCACCTCACGATTCCTTTGAAGCTCTCAAACGAAACAATGCAATGATAGGCCAAAGGTACGTAGAGATAGCTCCTTCTTCAGAGAGGCAGTGGAGAGAGGGTCACGGACCGAACGTAGGGCATGGAAAAATGGGTAATGAACCTGAACACAACCGTCATCATCGTGGCGGTCCCAATTTGAGTTCCCCCTCTGGTCGAGAGCGTGCTAGGTCCCGCTCCCCTCACAAACAGGAattctgtgtgtatttaaaggGGCTTCCGTATGAAGCAGAAAACAAACAGATATTTGAGTTTTTCAAAAACCTGGACATTGTTGAGGACAGTATTTACATTGCATACGGCCCCAACGGCAGGGCGACAGGCGAAGGTTTTGTTGAGTTCAGAAATGAAATGGACTACAAAGTTGCCCTTGGGTGCCACATGCAGTATATGGGTAGTCGATTCATTCAGGTGCACCCCAtcacaaagaaaaacatgtttgAAAAGATAGACGGAATCCGTAAAAGATTGCAGGGATCGCAGAGCGATCAGAAAGGCAGCTTGTCCGAGGGAGGTAAGGGCTCCAGAACATGCGCCCACATAACGAATATTCCCTACAACGTCTCGAAGAAAGACGTACGTTTGTTTCTAGATGGTATTCAGATGTTTGAGGACAGTCTCAAAGTGCTAGTAGATGGCAACGGCAATGGCCTCGGCCAGGCTGTGGTGCAGTTTAAAACTGACGAGGACGCTCTCAAGGCTGAGCGGTTACACAGGCAGAAGTTAAACGGCAGGGATGCTTTTGTCCACTTAGTCACATTCGAGCAAATGAAGGAAGTTGAGAGAAACCCGCCCCCACAGACCAAAAGAGGTCAGAAAGCTCAAGCTAATTCCCTTGCCCACGCACAAGCTCAAGCACAAGCTCAGGCTCAAGCGCAAGCTCAGGCTCAAGCCCAGGCCCAGGTGCAAGCACAAGCTCAGATTCAAGTCCAGGCACCACATGCTTTTCCTGGAATGACCGGAGAtgagtttaattttctgagaaacgCTGTAGGGAATCTTGGTAATGGACCTCCATTTGTCAACCCTTTTGCTGCCCCGGGTAATGGACTTGCTGGTCCACCACCTTTGCCGCCATTGGGTACAGCTTTGGGTGATGTGTCTCTTCCAGTTCCTCCACCCATGGTTGGAGGACATTTACCAGGGCCTGTTTTAGAGCCTCCTATATTCCGGCCAGGAGGAGCAAGTGGTGCACCTCCCGGCTTTCCCGGAGCGCCGGAGAACTTAAGAGGCATGTCTCCTTTTGACAATGGTTCGTCAAGAAAGGGTTCGAGTCAGAATCGTGGCGGCAGCCAGGGGCGTTCAGGAGGTTCCCAACCTGCTTTTGGACAATCCCCTGAAAGTCACAGAGGCTCGGCAAGTGGCGCTGGTCCAGGTGACCCCCGGCCAACCATTGTCAAAATCCAGAACATGCCTTTTACAGTCACGGTTGATGAAATATTAGATTTCTTTTATGGATACAAGGTGTTGCCTGGCTCTGTGTGCTTGCAGTTTAGCGAGAAAGGACTGCCTACCGGGGAAGCGATGGTTGCTTTTGATTCACATGAGGAAGCGATGGCTGCGGTTATGGACCTGAACGATAGGCCAATCGGGTCAAGAAAAGTAAAGATCACAATGGGATGAAAGATTTATCTGTAAAAACATTTGGTGGCGTCTTGACAGTTTTGACTGTTTTTATTTGCGGAACTAAGAACTACATAACGGTGGATCcccctttttgtttgtttttgttttttgctttgatACAACATGCTAGATTTACTCTGTAAAGTGGATTGATTATTGAAAATCTACGTACATTAATTCAACGCACGCTATGGTGGTTTTATGACATGGTTAGGACAATACAAAAGCTTCAAGGTTTCTCAAAACTGTATAGTTGTAAAAGCTGAAGTGTTACAGGTATAAAGAAACCTAAGAATgcttttgctcagatcagatttgctGTGTTTGAGTGCGCAAGTGTAAGCTGACACTGAGGCTATGCTAGAGCATTTATATGTACTGGTGGTCCCTTTCAGCTGATACATAAGCTGTAATCGGTTGATATTCTGTACCCAAgtcaacttgttttttttttttattattatttctgaagATTTTGCACTTCTTTTTATATGCTTTGTCTGTTCTCTGCTTTCTCAGATTGGGGTTTACACCCAGTGCTGCCACGCATGGTGTGTTTGCTCCCAAATTATAAATCAAGAGTTTCCCCTCAATGCTCAGTTTTACTCTATTTGATTTAAATGCATGCACGTGTTTTGTCAGTACATGTTCCTCTGCCAGCAGAGTGTATGGGATGAAGCTTACCTGTGAGAAAGACGAGATGTTAAACACATGTATCAGGCTCCCTCTCAGAACGGATCAGCAGGATTATCAGTAAATGTGGCTGTGTAATTAATGTTTTGTGTATGAAAAAGCTTTTCATTCTTCTCTTGCTTGTGCTCTTCCTACACTGTGCTTTGCTGTGTTTGCTATGATGTGTATATCTATACAGTAGCATTATTgcttctctttcttgtttttttaaggtCTCAGCCCTAAGCATTTCACATTATGTTGGTGTTTAGTTTATTTGCTGTTGTACATATTTTTCCAGCTCAGCTATTTTGTCAATAAAATGACATTCCTGAAATGATGAATCTGCAAGGTATTGTATTTTATCCTGTCTTCATGTCTCTCCTTCAGTCCATGAATGAATAAAGTTGGTTTTTCCTCTGCTGA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257807 lncRNA downstream 44140 15388095 ~ 15451570 (-) True G190183
TU257794 lncRNA downstream 141078 15353437 ~ 15354632 (-) True G190171
TU257566 lncRNA downstream 210995 15209617 ~ 15284715 (-) True G190001
TU257569 lncRNA downstream 278360 15215638 ~ 15217350 (-) True G190004
TU257549 lncRNA downstream 292944 15198426 ~ 15202766 (-) True G189987
TU257841 lncRNA upstream 55308 15556521 ~ 15569271 (-) True G190199
TU257848 lncRNA upstream 96114 15597327 ~ 15605977 (-) False G190204
TU257846 lncRNA upstream 104503 15605716 ~ 15607905 (-) True G190204
TU257868 lncRNA upstream 216886 15718099 ~ 15798757 (-) True G190214
TU257894 lncRNA upstream 289512 15790725 ~ 15866179 (-) False G190232
XM_022682449.1 mRNA downstream 8895 15468213 ~ 15486815 (-) False LOC103034615
XM_022682446.1 mRNA downstream 10064 15468213 ~ 15485646 (-) False LOC103034615
XM_022682835.1 mRNA downstream 29126 15409207 ~ 15466584 (-) True LOC103026676
XM_022682443.1 mRNA downstream 87741 15359175 ~ 15407969 (-) False LOC103026384
XM_022682442.1 mRNA downstream 87741 15359175 ~ 15407969 (-) True LOC103026384
XM_022682451.1 mRNA upstream 18452 15519665 ~ 15524173 (-) True ppcs
XM_022682455.1 mRNA upstream 222086 15723299 ~ 15761602 (-) False efcc1
XM_022682454.1 mRNA upstream 222086 15723299 ~ 15760205 (-) True efcc1
XM_022682456.1 mRNA upstream 264670 15765883 ~ 15784654 (-) True acad9
XM_007233856.2 mRNA upstream 313007 15814220 ~ 15825239 (-) True LOC103030908
TU257808 other downstream 38445 15431667 ~ 15457265 (-) False LOC103026676
TU257791 other downstream 173539 15318644 ~ 15322171 (-) False LOC103024926
XR_002651608.1 other downstream 2419194 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 2876144 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 3150328 12332545 ~ 12345382 (-) False mapkapk3
TU258141 other upstream 901578 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 1332637 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 1687452 17188665 ~ 17193747 (-) False irf6
TU258703 other upstream 1716108 17217321 ~ 17219780 (-) True G190788
TU258917 other upstream 2638150 18139363 ~ 18213530 (-) False mrpl20

Expression Profile