RNA id: XM_022682447.1


Basic Information

Item Value
RNA id XM_022682447.1
length 4936
RNA type mRNA
GC content 0.38
exon number 16
gene id LOC103034615
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15468213 ~ 15503648 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCCGAGGGGAGCAGAACCCCGCGGTACAGAAGATCCAGAGCCCGGCTCCTGCTGATAAATCGAGCGGGTAAACAGAGCAGAATCAGTAGAGCTGCGCTAAAAGCAGATAAACTCGatGGCGACTCAGTGTGTAGTGAAGGTTGAGCTCACCATTTCCTGCAAAAACCTCCTGGATAAAGATGTGGGCTCCAAATCCGACCCGCTGTGTGTTCTCCTGCAGAGTACGGGTAACGACCAGTGGACGGAGGTGGATCGcacagagagagtgaagaaCTGTCAGGATCCTGAGTTCTCTAAGAGGCTGTGCGTCGATTATCATTTTGAGAAGGTGCAGAAGCTGAAGCTGGGCGTCTACGACATCGACAACAAGTCTGTAGACCTGAAGGATGATGACTACCTGGGAGGATTTGAGTGCACTCTTGGACAGATTGTCTCCACTAAGAAGGTTACAAACCCTCTCGAACTCAAGAAAGGGAAACCAGCTGGTAAAGGCACCATAACGaTCGTAGCTGATGAAGTGAAGGATAATAGGGCTATTGTTCTGGAGGTGGAGGCCAGAAACCTGGACAAGAAGGACATGTTTGGTAAATCAGATCCGTTCCTGGAGTTCTTTAAGCAGGCTGATGATGGGAGCTGGACTCTGGTCCACAGAACAGAGGTCATTAAGAATAATCTGAATCCCTCCTGGAAGAAGTTCACAGTTTCTGTGGGGACGTTCTGTAATGCAGATTTCAACAAACCGCTTAAGGTCCACTGCTCTGATTACGATAGCGACGGCTCTCACGATCTAATTGGCATTTTCCAAACTAACGTGGTCGAGCTTCTGAAAGCAGACAGTGGATCAGGGGTGGAGTTCGACTGTATTCAtcctgagaaacagaaaaagaagaagagctATAAGAACTCGGGTGTGGTACGCATCAAAAACTGCAAGATCGAGGCTCAGTACACGTTCCTGGATTACGTGATGGGAGGCTGCCAGATTAATTTCACGGTAGGGATAGATTTTACGGGCTCTAATGGAGATCCTCGCTCCCCTGAGTCTCTGCATTACCTCAGTCCTGACGGGACCAATCAGTACCTCAACGCTATCTGGTCTGTGGGTCAGGTGATCAAGGATTATGACACGGATAAACTCTTCCCTGCTTTTGGATTCGGTGCTCAGGTGCCTCCAGATTTCAAGGTGTCGCACGAGTTTGCTCTGAACTTCAACCCCAACAGCCCTTTCTGCCAAGGTATAGAGGGAATCGTGCAGGCGTATCGCGCGGCTCTGCCGCAGGTTCGGCTCTACGGTCCGACCAATTTCTCCCCCATCATTAATCACGTGGCTCGAATCGCTGCAGGAGCAGCGCAGCAGTCTAACGCTGCAcaATATTTCGTGCTGTTGATCATCACTGACGGGGAGATCACGGATCTGGACCAGACGAAACAGGCCATAGTGAACAGCTCCAAGCTGCCCATGTCCATCATCATCGTGGGCGTGGGAGAAGCTGATTTTAAGGCGATGGAGGTTCTGGATGGTGATAACGGTGTGCTGAAAGCTCCCTCCGGAGAACCGGTGTCCAGAGACATCGTCCAGTTCGTTCCTTTCAAAAGCTTCGCCAGCGCTCCTAGAGAAGCTCTGGCTCAGACAGTTCTAGCTGAGGTTCCCGGTCAGCTGGTTTCCTACTTTAAGATGAGAAACATCATCCCGGTTAATCCTCCTGCTCCCAGTAAATAGAGGGAGATTCATCACCGGGACACGAGGGAGAAACGCTTATTAAGATTTTTACTGTTGCCTATATATTTCAGATTACGCCAGTTATGCATGCCAACATAACCTTAAAGTTTAGGGgccatatttttataaatatgtcagtttattttatctgactgtgtttgtgtttaccaATCCTCTGCTTTATCTTTGCTTCTCAAAAGCATGCCTGGGTGTTTTTCTGAgtcaaaatgattatttttgttatttttggatttttcagTGCAGTTTACAGTAATTCTACAGTAATTCTACAGTAACTGGAGAAGTTAAATTTCAATCCAAATGATTAAATCATCCACATTCCATTAAACACCTATAATCTCTATAAAATAATGCtctaatctataatctataattcATATGTTACTCTTTACAGTAAGTgtgcattaattaacagtactaaTTAACCAACAGGTCTCAATtcagtattattatttactacattcttaaacattaaaatttttagtaatgtttaataatttcttAACTAGAGttaataaatattcataagttgagacattatttatggaaatattttacatatttttcttaTTCACTGTTATCAGTACTGTTAAATGATGCGCACATATTGTAAAATGAGGCcccgcccacacacacatatatcaggatattttttttataaaagttatttttgtgttttctgtctTCTCAGTTCAgagaaacactttatttttaggTCACTGAAAActagaagtgttttataaatgttgtttATCAAAGCGataacaataacacaataactacGACACATGTTTCTGATTAAAAACTTTGATAGAGCGATAgaacatctcaaaataactaaACCTATCTTTTATTTCTGTGAAAGTGATTTAGAGATGGTGGCGTTTCCCTCAAtaatgcgtttttttttctcacaggtgatcacagtatcacaatattatcacgatacaaGATTGTCACaatacaatgtatcatgtaatgttatcacaatacgatattatTGCAGTAAGGTAATGTGATACAATGTTATTGCAGTGTGATATTAATCACAATATGATTTGCAATGCAATATCGCAATGTGAAATTACGATAACGATATTACAATACGAGATTATCGCAGTACAATATCATGATAGcgatatcacaatacatttctctacgatacttcacaccatctgtgtttctgaagaggataaaatactcctaaataatcaaatacaagcaaatatggatttattggtgtttcaGATTCACACAATTTTACAACcgatattcttcaccacagatTTATTAACCCTGTTAATtagattatagcgccaccaagTGAAAAAAGAAGCgactatgtttcaataaatatataacagtatTTGACTGTATGTATGGATATTGATAAGTATCGCAAATGAAAGCCTATCGATATGATATATTGCGATAATTGAATTTTGAGTGTAAAAATCTGTGCTGTATTTAGGTCTATTTTGGACGTTACACTTTATGTTGAGGACTTGTGTTCGCTCCTCCGCTGGGATAGCGTGCATGCTGTTTTAGAGCTCTTTAGagtttttgtttgctttgtcgTGTTAATCGAGAGATTTTCAGAAACGCTGCTTTAGGAAtgattttttcccaaaaaaaatctccagatgtgtgtaaaggggggcagaatttgagccactatatTAGCCTGTTACACATCTGCACCCACAAAGccatttatttacacattatcAGTATTCACAATCACTTCCAGCCTTTTACTGTCAGAAATACAGCGTGTTTTATCTGTGTAGCTTTAGACAATTAATTCCATGTTTAATTTCTATTGCAGTTTTGCTCTTTTGCAGTTGGATTATTGTGAAAATCAATAACTTTCTGATTAATAGAAGATTTTTTACACAAATCACCAAAATCCCACCTAAAGTAAGAgaataatctaaatctaaaactaGTGTACTGAGTGTACGGACAGATCATCCACTGTGATTCAGGTCTGATTTTCTCtataaaattgtgtaaaaaaaaaaaaaaaaaagtgtacaaGTTTGTTAGACGcaaaatatatctatttaactcgcatttctttctttctttctttcgcaCTTTGTAGTCGTGATGAGCGTAATATAGTTATGCTATCTGCACTAGCTATCTATAGTGAATAGGTTCAATTTAAAGATCATGCTTTATGAATGCCTTATAGAAAAATAATGCAGTTATTTTTTTGGAATGGAATTAACAGccactttatttttgtattgttcgATTGCAACAAAAGAataatgaaaacatttaaaatgcttaaattgTTTACGTAACTAGACAATCCTAAATTATGTAGGTATGCTGGATATAATAGAaataggtctgtcacaataattgcaatattgatttatcgtacaataaattaatataacctCAATAATGTTAGATAAttgtgatatcgtctattgtgtttgtttgtatgtttgttcacatgaataacagtgaacagtattttagtcagTCATGCTGCAATAACTCTGACTACATACACACTGTgaggactaaagtaggtgaagaaataagtatataattcccaaactaattataatgaATGATTAATTCTTGAAAAAGTGTATTATTACTTCTTTATGCTGTTCTGTTATCATTTTATCAATTGCATTTattagtcttaaaattacaagaatatcgtgtatcgcaataatttctgggacaatatatcgtccacagaacatttttattgtgacaggcctaaatataatatatgtgtgtgggaTTGCACTCTTACTTAATGAATGTTTGTTAAACTTTATGCAAACTAACAGCACATTGATTGATGCACATCACGTAAGTTGCCAAATATGCAGCCGTCTGCTTTTTTTATGCCTTATTATTAAAGATCAGTGTGTCAAAAAGTTTAAATGCAGGATATTAACACTTTAATGATCACAGTAAGCCTTATGGGACCATAGCAGAGGGCTAAtgatatattaattttttatttctgttgaaGGGAAGTTTTGTTCAGGCTGAATTTACACCACTGCTGAATTATAGAGCAgcttttccttctttttcacATCGATTTATTCTTTATCTGATTGATTTTTCTCATTTCTTGACTCTCATGTTCTCAGGcatgttccctttattttttcaagtaaaaataaaacatcgaCTCTGTTGAACCTTTA

Function

GO: NA

KEGG:

id description
K24524 CPNE1_2_3; copine 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257807 lncRNA downstream 16643 15388095 ~ 15451570 (-) True G190183
TU257794 lncRNA downstream 113581 15353437 ~ 15354632 (-) True G190171
TU257566 lncRNA downstream 183498 15209617 ~ 15284715 (-) True G190001
TU257569 lncRNA downstream 250863 15215638 ~ 15217350 (-) True G190004
TU257549 lncRNA downstream 265447 15198426 ~ 15202766 (-) True G189987
TU257841 lncRNA upstream 52873 15556521 ~ 15569271 (-) True G190199
TU257848 lncRNA upstream 93679 15597327 ~ 15605977 (-) False G190204
TU257846 lncRNA upstream 102068 15605716 ~ 15607905 (-) True G190204
TU257868 lncRNA upstream 214451 15718099 ~ 15798757 (-) True G190214
TU257894 lncRNA upstream 287077 15790725 ~ 15866179 (-) False G190232
XM_022682835.1 mRNA downstream 1629 15409207 ~ 15466584 (-) True LOC103026676
XM_022682443.1 mRNA downstream 60244 15359175 ~ 15407969 (-) False LOC103026384
XM_022682442.1 mRNA downstream 60244 15359175 ~ 15407969 (-) True LOC103026384
XM_007239905.3 mRNA downstream 146038 15318643 ~ 15322175 (-) True LOC103024926
XM_022682441.1 mRNA downstream 163006 15296659 ~ 15305207 (-) True LOC103025355
XM_022682451.1 mRNA upstream 16017 15519665 ~ 15524173 (-) True ppcs
XM_022682455.1 mRNA upstream 219651 15723299 ~ 15761602 (-) False efcc1
XM_022682454.1 mRNA upstream 219651 15723299 ~ 15760205 (-) True efcc1
XM_022682456.1 mRNA upstream 262235 15765883 ~ 15784654 (-) True acad9
XM_007233856.2 mRNA upstream 310572 15814220 ~ 15825239 (-) True LOC103030908
TU257808 other downstream 10948 15431667 ~ 15457265 (-) False LOC103026676
TU257791 other downstream 146042 15318644 ~ 15322171 (-) False LOC103024926
XR_002651608.1 other downstream 2391697 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 2848647 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 3122831 12332545 ~ 12345382 (-) False mapkapk3
TU258141 other upstream 899143 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 1330202 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 1685017 17188665 ~ 17193747 (-) False irf6
TU258703 other upstream 1713673 17217321 ~ 17219780 (-) True G190788
TU258917 other upstream 2635715 18139363 ~ 18213530 (-) False mrpl20

Expression Profile