RNA id: XM_022682454.1


Basic Information

Item Value
RNA id XM_022682454.1
length 2348
RNA type mRNA
GC content 0.58
exon number 8
gene id efcc1
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15723299 ~ 15761602 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTgcagcaggagtgtgtgtgtgtttaggagtgtgtttaggagtgtgtgtgtttaggagtgtgtgaaagtgtgtgttcttGTTGCATCTTCTAAAGGAATTATCAGGTATAATAATCGCGTGTTCCTATGAAGGGTTGGGGGTAACCGGGCGCGCGCGCAGCAGCATGGAGACCCCGGACGCGTGCGATCCGTACGGGCGCCCCGCGCGCCGCACACAATGGATCGTGAGCACGCTGGCCTACCACTACGGGCTGGACCGCGGGGTGGAGAACGAGATCATCGTGCTGGCCACGGGTCTGGACCAGTACCTGCAGGAGATCTTCCACCACCTGGACTGCCGGGGGGAGGGCCGGGTCCCCGCGGAGGACTTCAGGGTGCTGTGCGCGGTGCTGGGGCTCGGGGAGGAGGCgcgggaggaggaggtggaggagagcTCCGGGATCCTGGACTCCCTCCCCGGGGAGTTCACCTTCCGCCAGTTCCACGCTAAACTCTGCGGCTACTTCAGCACCAGGGCCGGCCGCGGGTACGAGGACGGCCGGCTGCTGGTGGGAGGAGACAGCGAGCACATCGAGACTCAGATCCGCCTCAGGAGCCCCCTCAGGCGGCGGGGGAAGCTGCTGAGCCCCGCGGGCTCCGGAGCGAAGCCCGGCTGTAAGCCCGGATCCTGCACGCGGGAGTGCTACGAGGAGATCGTGGCTCTGGAGGAGGCGGAGGACCGGATGGCgaagctggaggaggagaacgcCAGTCTGAGAGAGCTGGTGGAGGACATGAGGGCGGCGCTGCAGAGCAGTGATGCCCGGGCACTGGCCCTGCAGGTCGGACTGTGGAAAAGTCACGCTAAACACAGGCCAGACAGCGGCTGCTTTATCGCCCGTCACAAGCGCTCAGCCCAGAAATCCACTTTCCACGGAAACCTGAAGAGCCTCCAGGGTTTCCTGCGTGAGGTGGAGCTGGCCCAGGTGGAGCAGGTGGAGGAGGTTCTGCTGCTGAAGCATCAGGAGCAGAAGAAGCTGGAGCAGGAGCTCAGGGCGTCGCGGGAGGCGGCGCTGGGGCTGGAGGAGTGTAATCGGACTCTAAAGATGGAGCACATGGAGATgaggaagaaggtggaggaggcCAGGCAGGCTCTGCTGGTTGGTTTGGGGAAGGTGAAGGAGCTGGAGTCTAAAGCCAATCAGATACCTGTCCTACAGAGACACATAGAGCAGCTGGAGATGGAGCTTCTGTATTTCAGGTCTGAAATGTCTAAACAGTCTGTGGTGTTCAGCAGTGTGGAGGAGGTGCGGTACGGCCGGCAGAATCAGCGCTGCTGTTCGGATTCACATCGTGACCGGGATTCTCCAACAGGAAGAGCAGAAAACGCTCACGAGAACGTGGAGGAGCAGCTCTTCCGGTCGGTGGAGGGTCAGGCGGCGtctgatgaagaggaggagcgCTGGACGGGGGAGCAGCAGAGGCAGGTGGACGAGGTGAAGAAGATACTGACCAGACTCTCCTGCTGTGGAGACAGGTGTGATGATAGAGCTCTGAAGAGGCTGCTGTCTCACTGTGGAGACTCGCGAGCGGAGGAGAGCTACACCGCAGTTCTGGAGCTTCTGGATCGAGTGACCCGCCTCCacaaacagctggagctcagagAGAACCAGGCCATGAGGAACCGGCCCGACCCAGAGCAGATAAAGGACTCCCTGCTGCAGGAGCTCCAGCAGAAGGCGGAGGAGACGGAGCTCCTCCACAGGGAGCTGCAGATGTTGGAGACGGAGAGAGTTCGTCTCTCTTTAGTGGAGGAGAAACTCCTGGATGTTCTGCAGCTCCTGCAGCAGCTCAGAGAACTGAACGTCTCGAGGAGATCATTGGGGAAGATTTTACTGAGCACACTGGAGTCCTGCAGCGACCCTCAACACgGTAAAGCTCAtatcctggaggtgctgaacgcTTTGTGTCATGAGCTGACGGCGTGTGAGGTTCTCTCCAGCAGTGGAGTTTTAGAGAAAGCTCAGAGCCACCAGTCCCTCACCAACCCtctcctcatctcctgttaAACTACAGCGCCACCTGCTGTCTGAAAACAGCCGTGAACTCTTTACCTGATCCATTACATCCCATCAAAACCCCAGAGCTGCTGACTGGTGTCTGATATTCCTCAATCCAGCCGAGCTCCTCCTCCTTTCAGAAGATCAGCACTTCACTTCTACACCCTCTCCCTTCCTTCTTTTACCTGTTTGTAATTAATAGTTGTTTATATGTCTGTTTTATATCTGttatatatgcagctctggaaatgaagaaaatgaagagatcacttcagtttctgaatcagtttctctgattttgctattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257846 lncRNA downstream 115394 15605716 ~ 15607905 (-) True G190204
TU257848 lncRNA downstream 117322 15597327 ~ 15605977 (-) False G190204
TU257841 lncRNA downstream 154028 15556521 ~ 15569271 (-) True G190199
TU257807 lncRNA downstream 271729 15388095 ~ 15451570 (-) True G190183
TU257794 lncRNA downstream 368667 15353437 ~ 15354632 (-) True G190171
TU257894 lncRNA upstream 30520 15790725 ~ 15866179 (-) False G190232
TU257895 lncRNA upstream 30520 15790725 ~ 15813783 (-) True G190232
TU257909 lncRNA upstream 104111 15864316 ~ 15866117 (-) False G190232
TU257957 lncRNA upstream 148830 15909035 ~ 15909528 (-) True G190252
TU257962 lncRNA upstream 206290 15966495 ~ 15969045 (-) True G190257
XM_022682451.1 mRNA downstream 199126 15519665 ~ 15524173 (-) True ppcs
XM_022682445.1 mRNA downstream 218908 15495710 ~ 15504391 (-) True rbm12
XM_022682444.1 mRNA downstream 222086 15495710 ~ 15501213 (-) False rbm12
XM_022682449.1 mRNA downstream 236484 15468213 ~ 15486815 (-) False LOC103034615
XM_022682456.1 mRNA upstream 5678 15765883 ~ 15784654 (-) True acad9
XM_007233856.2 mRNA upstream 54015 15814220 ~ 15825239 (-) True LOC103030908
XM_007243528.2 mRNA upstream 71883 15832088 ~ 15833721 (-) True LOC103047460
XM_022682459.1 mRNA upstream 86656 15846861 ~ 15851191 (-) True LOC103030277
XM_022682469.1 mRNA upstream 108930 15869135 ~ 16138293 (-) False LOC103029523
TU257808 other downstream 266034 15431667 ~ 15457265 (-) False LOC103026676
TU257791 other downstream 401128 15318644 ~ 15322171 (-) False LOC103024926
XR_002651608.1 other downstream 2646783 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 3103733 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 3377917 12332545 ~ 12345382 (-) False mapkapk3
TU258141 other upstream 642586 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 1073645 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 1428460 17188665 ~ 17193747 (-) False irf6
TU258703 other upstream 1457116 17217321 ~ 17219780 (-) True G190788
TU258917 other upstream 2379158 18139363 ~ 18213530 (-) False mrpl20

Expression Profile