RNA id: XM_022682456.1


Basic Information

Item Value
RNA id XM_022682456.1
length 2044
RNA type mRNA
GC content 0.49
exon number 18
gene id acad9
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15765883 ~ 15784654 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAATTTTAGCAGATTATTATCGATTTCCAGATCATTAAAACTCTCTACATCTTTATTCCCGCCTCCAGCGAGATTAACAGCTCCTCTACAGCCCCGGCGCTCCGTCAGAACCAGCCCCAGCAGCGCAGCCTACGCTAAAGACCTGTTCCTGGGCAAAGTCAACCAGAAAGAGGTGTTTCCCTATCCGGAGATCAGTAATGAAGAGCTGCAGGAGATTAATCAGTTCGTGCCGCCGGTGGAGAAGTTTTTCAGTGAAGAAGTCGATTCAAAGAAGATCGATGAGGAAGCCTTTATCCCTCCTGAAACGATGGACGGACTGAAAGCACTCGGGTTGTTCGGGATCCAAATACCTGAGGAGTATGGAGGTCTCGGCCTGTCGAACACGATGTTCGCTCGGTTAGGAGAGATTATCTCTATGGATGGAGCTATTACCGTCACTCTCGCAGCACATCAGTCCATCGGATTAAAGGGTATCCTGTTGGCTGGAACTGAGGAACAGAAAGCAAAATATTTACCCCGTCTGGCTTCAGGAGAGCATATAGCAGCTTTCTGTCTGACTGAACCCGGgagTGGAAGCGATGCTGCTTCTATTCAGTGCCGCGCCAAACTGACGGAGGATGGGAAACACTTCCTGCTCAACGGCTCAAAGATATGGATTTCTAATGGTGGAATCGCTGAAATTATGACAGTGTTCGCCAGAACAGAGGTGGTGGATAAGGACGGGCAGAAGAAAGACAAAATTACAGCTTTTATTGTAGAAAAGGCGTTTGGTGGGGTGAGCTGCGGCAAACCGGAGGATAAACTGGGCATCCGAGGATCAAACACCTGTGAGGTGACATTTGAAGACACAAAGGTGCCAGTAGAGAACGTGATTGGGCAAGTTGGAGATGGATTTAAGatTGCAGTGAATATTCTGAACAGTGGGAGGTTCAGTATGGGCACTGCGGGTGCAGGCATGATCAAAAGACTGATTGAGATGACTGCAGAATATGCTGGAACAAGGAAACAGTTCAACAGGAAGCTCTCTGAGTTTGGAATGATTCAGGAGAAGTTTGCTCTCATGGCTCAGTACGCGTATGTGATGGAGAGCATGGCGTATCTCACTGCTGGGATTATGGACAGACCTGGAGTTCCAGACTGCTCTCTGGAGGCAGCTATGGTGAAGATCTTCAGCTCTGAGGGAGCGTGGATTTGTACGAGTGAGGCGCTGCAGGTTTTGGGAGGACTGGGATACACCAAGAATTACCCGTATGAACGCTACCTCAGAGACTGCAGGATCCTGCAGATATTCGAGgGAACCAATGAGATCTTGAGGATGTTCGTGGCTCTGACAGGGATGCAGCACGCTGGTAAAATAATAACAGGGAAAATAAAAGAGATGAAGAAGGGGAACGTGGGAACTGTGTTTGAGTTTTGTAAGCAGAAGATTATGGAGAATCTGGGAAAGACCGCGAACTTCGGCCTGACCGGCAAAGACGGGGTCGTGCACCCCAGCTTAGCGGAAAGCGCCACCATGTTTGAGGAGAACGTGGTGGAGTTCAGCTCTATTGTGGAGAGCTTGCTGTACCGATACGGAAAGacTATAGTAGACGAGCAGCTGCTGCTGAAGAGAGTTGCTGATATACTGATTCACCTTTACGCCATGACGGCCGTCCTCTCCCGCGCCAGTCGCTCCATCAGCATCGGCCTGCGTAACCACGACCACGAGGTGCTGCTCGCTAACAATTTCTGCAAAGACGCTTACTTTAAAATCAACTACTGGACTGCTCAGCTGCAGAGACATTCCCCAGAGAACAACGACGACAACATAAAGAAGATCGCTCAGTTTGTTCTGGAGAAGCGAGCGTATACCTGCTCTCACCCTCTAGACCGAACCTTTTAACCTGCATCACCTGTATTAAACATCACCTGACCGTTTCCTGAGTAATGACTGGGTGTAAAAATCTGGTCCTCAGCTCTTATTTACTGGATTTTATCAGCAACAAAACCTCTTAACTCCTGCAACGGTTTTTACCACAGACAATAATTCACACACttggaga

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K15980 ACAD9; acyl-CoA dehydrogenase family member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257846 lncRNA downstream 157978 15605716 ~ 15607905 (-) True G190204
TU257848 lncRNA downstream 159906 15597327 ~ 15605977 (-) False G190204
TU257841 lncRNA downstream 196612 15556521 ~ 15569271 (-) True G190199
TU257807 lncRNA downstream 314313 15388095 ~ 15451570 (-) True G190183
TU257794 lncRNA downstream 411251 15353437 ~ 15354632 (-) True G190171
TU257894 lncRNA upstream 6071 15790725 ~ 15866179 (-) False G190232
TU257895 lncRNA upstream 6071 15790725 ~ 15813783 (-) True G190232
TU257909 lncRNA upstream 79662 15864316 ~ 15866117 (-) False G190232
TU257957 lncRNA upstream 124381 15909035 ~ 15909528 (-) True G190252
TU257962 lncRNA upstream 181841 15966495 ~ 15969045 (-) True G190257
XM_022682455.1 mRNA downstream 4281 15723299 ~ 15761602 (-) False efcc1
XM_022682454.1 mRNA downstream 5678 15723299 ~ 15760205 (-) True efcc1
XM_022682451.1 mRNA downstream 241710 15519665 ~ 15524173 (-) True ppcs
XM_022682445.1 mRNA downstream 261492 15495710 ~ 15504391 (-) True rbm12
XM_022682444.1 mRNA downstream 264670 15495710 ~ 15501213 (-) False rbm12
XM_007233856.2 mRNA upstream 29566 15814220 ~ 15825239 (-) True LOC103030908
XM_007243528.2 mRNA upstream 47434 15832088 ~ 15833721 (-) True LOC103047460
XM_022682459.1 mRNA upstream 62207 15846861 ~ 15851191 (-) True LOC103030277
XM_022682469.1 mRNA upstream 84481 15869135 ~ 16138293 (-) False LOC103029523
XM_022682468.1 mRNA upstream 84481 15869135 ~ 16138293 (-) True LOC103029523
TU257808 other downstream 308618 15431667 ~ 15457265 (-) False LOC103026676
TU257791 other downstream 443712 15318644 ~ 15322171 (-) False LOC103024926
XR_002651608.1 other downstream 2689367 13062935 ~ 13076516 (-) False tsen2
TU256647 other downstream 3146317 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 3420501 12332545 ~ 12345382 (-) False mapkapk3
TU258141 other upstream 618137 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 1049196 16833850 ~ 16869461 (-) False cass4
TU258706 other upstream 1404011 17188665 ~ 17193747 (-) False irf6
TU258703 other upstream 1432667 17217321 ~ 17219780 (-) True G190788
TU258917 other upstream 2354709 18139363 ~ 18213530 (-) False mrpl20

Expression Profile