RNA id: XM_022682473.1


Basic Information

Item Value
RNA id XM_022682473.1
length 2477
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC103037092
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 16966216 ~ 17007699 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gacacactatacacacacacacacagattattgttaaacagagggagagaagaagCGGCAGGAGGAGGTTAAACATGATGTCCTCCTACAAGAGGGCCACCTTAGACGAGGAGGACCTGATTGACACCACCTCAAACGGAGTGTACCACCCCTCCACAGTGCAGGTTTCGCTGCATCGTGGTTCGGGTCCTCGGTGTTGGACCAGGCGTAGTGATGCTGAGAGGAAGCTGGTGTTGGTGGTGtgcgctctctctctggctTTATTCATCTGCATCCTCACGCTGGGTCTGCATTATAATGAGAcccaTCCAGGTGTGTGTCTGTCAGAGCCGTGTGTTAGCGTAGCGGCGGCGGTGATGGGGGCTTTGGACCGCTCGGTGGACCCCTGTACAGACTTCTATAACTTCGCCTGCGGCGGCTGGGTAAAGAAAAACCCACTGCCTGAGGGCAAATCCCGCTGGGGTCCTTTCAGCAACCTGTGGGAGCAGAACATGGCCATCATGAAGAGTTTACTggAGAACACGAATCAGCAGGGTCTGAGTAAAGCGGAGCTGAAAGCTCAGCGTTACTATCAGGCCTGTATGAGTGAAGCCAGAATCGAGGAGCTGGGGTCTCAGCCTTTACAGGAGCTCATCAACCAGACTGGTGGCTGGGCTCTGACCGGCCCCTGGGATAAAGAAAATTTCCAGGAGGTTCTGCGCATCGTTTCTGCAAACTACCGAACTTCACCTTTCTTCACTGTGTTCGTCAGCACTGACTCCAAAAACTCCACCAGCAACATCATCCAGGTGGATCAGTCTGGTCTGGGTTTACCCTCGCGTGAATACTATCTCAACAAGACCGCCAACGAGAAGTATCTGAAAGCGTATCTGGGCTTCCTGGTAGAGCTGGGAGTCCTGCTGGGCGGCTCGGAGGAAACTTCCCGCAGGATGATGCAGGAAATTGTAGATTTTGAGACGAGTCTGGCGAACATCACAGTTCCCCAGGAGGAGCGGCGAGACGAGGAGCTGATCTACCACAAGATTCAGGCCAAAAACCTATCATCTCTGGCTCCTGCTGTGGATTGGATGCCGTTCCTCAGGGCTGTTTTTGCTCCAGTGTCTCTGAACGATTCAGAGCCTGTGGTGGTCTACGCTACAGAATACCTGCAGAAAGTCTCCCAGCTCATAACCAACACCAACAAGAGCACCTTGAATAACTACATGATGATGAAGGTGGTGAGGAAGATGGTGTCCATCCTGGACCAGAGATTCCAGGATGCAGAGCAGCGTTTTCTGGAAGTCATGTACGGCACCAAGAAGaGCTGCACCCCCCGCTGGAAGCTGTGTGTCAGTGATACGGACAGCGCTCTGGGCTTCGCTCTCGGTGCTCTGTTTGTTAAAGCCACATTTGCAGAGGACAGCAAAGCCTTCGCTGAAGATATGGTCTCTGAGATTAAATGGGCGTTTGAGGACAGTTTGAAGCAGGTGGGCTGGATGGATGGTGACACCAAGAAAGCTGCCAAAGAGAAGgcAGATGCGATATACAATATGATCGGCTACCCGAAGTTCATCATGGACCCCAAGGAGCTGGACAAAGTTTTCAATGATTTTGAGGTAGTTTCAGATCTCTACTTCAAGAACGTCATGCACTATTACAACTTCTCCGGCCGAGTGACGGCAGATCAGCTGAGGAAAGCTCCCAACCGAGACCAATGGAGTATGACGCCCCCTACAGTCAACGCCTATTACAACCCCACCAAGAATGAGATGGTTCTACCTGCCGGCATCCTGCAGGCTCCTTTCTACAGCCGCGCCTGGCCAAAAGCCCTGAATTTTGGTGGTATTGGTGTTGTTATGGGGCATGAACTGACGCATGCATTTGATGACCAAGggaGGGAGTATGATAAGGATGGAAATCTGCGCTCCTGGTGGAAGAACTCGTCAGTAGAAGCGTTTAAGCGTCAGACTCGCTGCATGGTGGAGCAGTACAGCAACTACAGCGTCAACAACGAGCCCCTCAACGGCAAACATACGCTGGGGGAAAACATCGCCGACAACGGCGGCCTTAAAGCTGCGTATAAGGTTCGTCAAAACTCCGGGTCATCAGAATTTCAGAATTAAAAAACACCTGGGAAATAAGCTATAAGCTATTGCTAAATATGTGCTGGAAATATCAGTGAGATTCTGGTAAAGTTAAGCTTTTCTGATACTAAAATCCCAATATTTCAGCTAACAATGCTCTTTGTTAAGTATTATAGCTAcgcatttcctttgtttttgtttatatggttatttttctgattaatttTGCAAAGTTGTGATATTAGGGACATTTCTAAATACATTTAGCATCCAATATGATTAATTAAGGTGCAAAACTAACCACGTGAGGGTACCCCAGCAACCAAAAATGTTAACAATTACCGTATTTTATGGACTATGAGgcacactaataataaacatctattttcctGTCAATTTACGTAcatacagact

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651614.1 lncRNA downstream 147 16963895 ~ 16966069 (-) True LOC111195388
TU258648 lncRNA downstream 6861 16958734 ~ 16959355 (-) True G190751
TU258647 lncRNA downstream 7784 16957161 ~ 16958432 (-) True G190750
TU258646 lncRNA downstream 7784 16957410 ~ 16958432 (-) False G190750
TU258207 lncRNA downstream 12269 16945476 ~ 16953947 (-) True G190453
TU258660 lncRNA upstream 13212 17020911 ~ 17105668 (-) True G190758
TU258671 lncRNA upstream 45448 17053147 ~ 17056122 (-) True G190769
TU258695 lncRNA upstream 117794 17125493 ~ 17131135 (-) True G190783
TU258698 lncRNA upstream 141769 17149468 ~ 17151839 (-) True G190786
TU258697 lncRNA upstream 145691 17153390 ~ 17154405 (-) True G190785
XM_022682838.1 mRNA downstream 11522 16886711 ~ 16954694 (-) True LOC103036783
XM_022682471.1 mRNA downstream 81620 16875408 ~ 16884596 (-) True cstf1
XM_022682470.1 mRNA downstream 96755 16833850 ~ 16869461 (-) True cass4
XM_022682837.1 mRNA downstream 138779 16796868 ~ 16827437 (-) True fam120a
XM_022682462.1 mRNA downstream 171986 16739287 ~ 16794230 (-) False phf2
XM_022682477.1 mRNA upstream 102972 17110671 ~ 17123621 (-) False strip1
XM_022682476.1 mRNA upstream 102972 17110671 ~ 17123621 (-) True strip1
XM_022682478.1 mRNA upstream 123642 17131341 ~ 17158655 (-) True LOC103038379
XM_022682481.1 mRNA upstream 155117 17162816 ~ 17178813 (-) False LOC111195389
XM_022682480.1 mRNA upstream 155117 17162816 ~ 17178812 (-) False LOC111195389
XR_002651612.1 other downstream 96755 16833850 ~ 16869461 (-) False cass4
TU258141 other downstream 505288 16402791 ~ 16460928 (-) True G190405
TU257808 other downstream 1508951 15431667 ~ 15457265 (-) False LOC103026676
TU257791 other downstream 1644045 15318644 ~ 15322171 (-) False LOC103024926
XR_002651608.1 other downstream 3889700 13062935 ~ 13076516 (-) False tsen2
TU258706 other upstream 180966 17188665 ~ 17193747 (-) False irf6
TU258703 other upstream 209622 17217321 ~ 17219780 (-) True G190788
TU258917 other upstream 1131664 18139363 ~ 18213530 (-) False mrpl20
XR_002651616.1 other upstream 1159719 18167418 ~ 18175117 (-) False LOC111195395
TU258958 other upstream 1303807 18311506 ~ 18315109 (-) False LOC103041510

Expression Profile