RNA id: XM_022682476.1


Basic Information

Item Value
RNA id XM_022682476.1
length 2803
RNA type mRNA
GC content 0.53
exon number 21
gene id strip1
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17110671 ~ 17123621 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCGAGATCTgggcgtgtgtgtatgtgtggaggTAAGATGGAGGGTAACGGAGCTCCGGGGAACAACAAGCAGAAACCGATTTTACCGAAAAACAGAGGCGAATTTATCCGCAACCAGAGGAAGGACTCTGAGGGATTTTCTGAAGCTCCTGATCTGGAGTTTGAATACGCCGACTCAGACAAATGGGCAGCAGAATTATCAGaGCTGTACAGCTATACAGAGGGTCCGGAGTTCCAGCTGAACAGGAAGTGCTTTGAGGAGGATTTTCAGACACATGtggaGGGGAAGAGGTGGGTGGAGCTTGATGCTGTGCAGCACAGAGCTCACGCCATGCGGCTGCTGGACGGACTGGACGTGACCGGCCGGGAGAAGAGGTTAAAGGTGGCCAGAGCCATTCTCTATATGGCACaaggtacATTTTCGGACTGTGGTTCGGAGGCGGAGGTTCAGCACTGGATCAGATATAACGTGTTTCTGCTGCTGGACGTGGGAACCTTTACTGCACTCGTGGAGCTTCTCAACATGGAGATAGaaaacAGTGCAGCCTGCAGCAGTGCAGTGAGGAAACCTGCTATCTCCCTCGCCGACAGCACAGAcctcagGGTGCTGCTGAATATCATGTATCTGATGGTGGAGACAATTCAGCAGGACGATCCTGCAGATCCTCCAGAGTGGAGAGCTTCCAGAGAAACCTTCAAAACAGAGCTGGGCTCTCCTCTGTACAACAGCGAGCCAGTGTCTGTGATGCTCTTCGCCATGGTAACCAAGTTCTGCAGTGGCCACGCCCCCCACTTTCCCATGAAGAaggttctgctgctgctgtggaaaACTATACTGTTTACGTTGGGTGGGTTTGAGCAGCTGCAGCGGTTAAAGGTGTGTAAGAGGGTGGAGCTTGGCTTGCCCCGCCTCCCGGAGGACAGCATCAGTGTGATTCGCAGCATGAGAGCCGCCTCCCCTCCCGCCTCCGCCTCCGACCTGATAGAACAACAGCAGCGGAGAACCCGCCGAGAACacaaggctCTGATAAAGCAGGAGAATCTGGATGCGTTTAATGAGAAAGATCCGTATAAGGCTGATGATGCtcgtgatgatgatgatgaaggtgatgataatgataataatgagaGCGCTCTGGAGGCGGAGCCGTTTCCTCTGGAGCGGGATGAGGTCATGCCCCCGCCCATCCCGCACCCGCCCCAGACCGACCGCGTCTCCTTCCCCAAGGGCCTGCCCTGGGCTCCTAAAgtcagAGAGAAGGATATCGAGAATTTCCTGGAGTGCAGCCGGAGTAAATTTATTGGATACACACTCGGAAAtgATACAGACACAGTGGTCGGTCTGCCACGGCCCATTCATGAGAGCATCAAAACCCTAAAACAgcaTAAGTACATCTCCATAGCTGAGATTCAGATTGCAAAGGAGGAGGAGTTTCAGAAAACTCCACTGTCTGGGggggaGGAGGAGTTGGAGCTTTGTGCcactgagctgctgtatcagggAATCCTTCCCAGCCTTCCACAGTACATGATTGCTTTGCTGAAGATCCTCCTCGCTGCTGCTCCGACCTCAAAGGCCAAAACCGACTCTATTAACATCCTCGCAGACGTGCTGCCGGAGGAGATGCCgacTACAGTGCTGCAGAGTATGAAGCTCGGAGTCGACGTAAATCGTCACAAAGAAATCATTGTTAAAGCGATTTCAGCCATTCTGCTGCTCCTGCTCAAACACTTCAAACTCAACCACATCtaccagtttGAGTATATGGCTCAGCACCTGGTTTTTGCAAACTGTATTCCACTCATCCTCAAGTTCTTCAACCAGAACATCATGTCCTACATCACAGCCAAAAAcagTATCTCAGTGCTGGACTTCCCGTACTGCGTCCTACACGACCTCCCAGAGCTCACAGCGGAGAGTCTGGAAGCTGGTGATAATACTCAGTTCTGTTGGAGGAACTTGTTCTCCTGCATCAACCTGCTGAGGATCCTCAACAAGCTCACCAAGTGGAAGCACTCCAGGACCATGaTGTTGGTGGTGTTTAAATCTGCTCCGATCCTGAAGAGGGCGCTGAAGGTGAAGCAGGCGATGATGCAGCTCTACGTTCTGAAGTTGCTGAAGGTCCAGACGAAGTATCTCGGCCGGCAGTGGAGGAAGAGCAACATGAAGACCATGTCGGCCATTTACCAGAAAGTTCGCCATCGCCTTAATGACGACTGGGCGTACGGCAACGcaGATCTTGACGCGCGCCCGTGGGATTTCCAGGCGGAGGAGTGTTCTCTGAGAGCGAGTATCGAGCGCTTTAACAGCCGGCGGTACGATAAAGCCGTGGGGAACCCGGAGTTCTCCCCGGTGGATAACTGCCTGCAGAGCGTCCTCGGCCAGAAGGTGGAGCTCCCCGACGACTTCCAGATGAACTACGACCTCTGGCTGGAGCGGGAGGTCTTCTCCAAACCCATCTGCTGGGAGGAGCTGCTGCAgtaaacatgctcacacacacagactgggccttttattcattattaaggACATTTAAAGAGGTAGTTCTGTGGAAATCTGAACCCAAACCCCAGCAACCACACCAACCCAACCCCAGCTGTTCTCCGTTAGCTGTTCGGGTTCGGTGcttctttagcattagcacggGAGCTACCAGGCTAATGTCGCTAACAGGTCATGGGCGCTTGTATACCCATCAGTTAGCACTGGCTAATCATCACACACACCTTCATCATCCACAAGGCTGAAGTCGGTCTCTCACCGGAACTCtgcgttccaccttaaatccacCTTAAACACGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258660 lncRNA downstream 5003 17020911 ~ 17105668 (-) True G190758
TU258671 lncRNA downstream 54549 17053147 ~ 17056122 (-) True G190769
TU258656 lncRNA downstream 66663 16993348 ~ 17044008 (-) True G190754
TU258658 lncRNA downstream 90235 16999579 ~ 17020436 (-) True G190756
XR_002651614.1 lncRNA downstream 144602 16963895 ~ 16966069 (-) True LOC111195388
TU258695 lncRNA upstream 1872 17125493 ~ 17131135 (-) True G190783
TU258698 lncRNA upstream 25847 17149468 ~ 17151839 (-) True G190786
TU258697 lncRNA upstream 29769 17153390 ~ 17154405 (-) True G190785
XR_002651615.1 lncRNA upstream 112960 17236581 ~ 17238451 (-) True LOC111195391
TU258750 lncRNA upstream 126576 17250197 ~ 17251702 (-) True G190827
XM_022682473.1 mRNA downstream 102972 16966216 ~ 17007699 (-) False LOC103037092
XM_022682472.1 mRNA downstream 121586 16966217 ~ 16989085 (-) True LOC103037092
XM_022682838.1 mRNA downstream 155977 16886711 ~ 16954694 (-) True LOC103036783
XM_022682471.1 mRNA downstream 226075 16875408 ~ 16884596 (-) True cstf1
XM_022682470.1 mRNA downstream 241210 16833850 ~ 16869461 (-) True cass4
XM_022682478.1 mRNA upstream 7720 17131341 ~ 17158655 (-) True LOC103038379
XM_022682481.1 mRNA upstream 39195 17162816 ~ 17178813 (-) False LOC111195389
XM_022682480.1 mRNA upstream 39195 17162816 ~ 17178812 (-) False LOC111195389
XM_022682479.1 mRNA upstream 39195 17162816 ~ 17178812 (-) True LOC111195389
XM_022682839.1 mRNA upstream 57493 17181114 ~ 17193619 (-) True irf6
XR_002651612.1 other downstream 241210 16833850 ~ 16869461 (-) False cass4
TU258141 other downstream 649743 16402791 ~ 16460928 (-) True G190405
TU257808 other downstream 1653406 15431667 ~ 15457265 (-) False LOC103026676
TU257791 other downstream 1788500 15318644 ~ 15322171 (-) False LOC103024926
XR_002651608.1 other downstream 4034155 13062935 ~ 13076516 (-) False tsen2
TU258706 other upstream 65044 17188665 ~ 17193747 (-) False irf6
TU258703 other upstream 93700 17217321 ~ 17219780 (-) True G190788
TU258917 other upstream 1015742 18139363 ~ 18213530 (-) False mrpl20
XR_002651616.1 other upstream 1043797 18167418 ~ 18175117 (-) False LOC111195395
TU258958 other upstream 1187885 18311506 ~ 18315109 (-) False LOC103041510

Expression Profile