RNA id: XR_002651626.1


Basic Information

Item Value
RNA id XR_002651626.1
length 4104
RNA type misc_RNA
GC content 0.47
exon number 23
gene id elmo2
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 21510924 ~ 21544831 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTCTATCCCTTTTAACCATCATCTATCCCTGAAGAGGGAAAATAGCAGCAGGGAAAGCGGGATTTGGCGGATTATGGAGCAAAATACTCACATTTCGGGCTCGCCGTGCTGATCCTGGACTGACAGAACCGGACAGGATCGTCAGCACCAGTTCAGACGGCAGAGAGAGGATCGGACCAGTTCAGCGCTTCAGATTTGGTGGAATGCCAGAGAGGAGAGCCGTCATGCCACCGCCGTCAGACATTGTGAAAGTAGCCATCGAGTGGCCTGGTGCCAACGCCCAGCTCATCGAAATAGACCAGaaaaagccGCTCTCCTCCATCATACGAGAAGTTTGTGATGGGTGGTCTCTGTCCGGTTCTGAGCAGTTTGCGCTGCGTTACGCTGATGGACCTCAGCTCTACATCACTGAACAGAGTCGCGGGGAGATCAAGAACGGGACCATCCTGAGATTAGCCATCTCTCCAaCGAGAGCGGCTCGGCAGCTTTTGGACAGGATCCAGTCTCACGGTATCGACGCTCGCCTCGAGGCTCTGAAAGAACTGGCTAAGCTCTCCGCTGACCCCACCTTCGCCACAGAGTTCATCAACATGGAGGGCATCGGGACCCTGGCGCGGCTGGTGGAGAGTGGCACGCATTTTGGGGAGATGTTGGCCTTCACCCTCACAGCATTCCTGGAGTTGATGGATCACGGCATTGTGTCCTGGGACCTGATCTCGCTGTCCTTCATCAAACAGATTGCCGGTTACGTGAATCAGCCGATGGTGGACGTGTCGATCCTGCAGCGTTCTCTGGCGATACTGGAGAGCATGGTGCTGAACAGTCACAGTCTCTACCACCGGGTGGCGCAGGAGATCACCGTGGGACAGCTCATCGGACACCTGCAAGTGTCCAATCAGGAGATCCAAACCTATGCTATTGCCCTTATTAACGCTCTGTTCCTTAAAGCTCCGGAGGACCGACGCCAggAAATGGCCAGTACGTTGGCTCAGAAACACCTCAGATCCATCATCCTCAATCATGTCATTCGCGGCAATCGACCAATCAAAGCCGAGATGGCGCACCAGCTGTACGTGCTGCAGGTTTTAACCTTTAACCTGCTGGAGGAGCGCATGATGACCAAAATGGATCCCACTGATCAGGCTCAGAGAGACGTCATCTTCGAGCTGCGCCGGATCGCGTTCGACGGGGAGAACGATCCCACCGGCACTGAGAAGAGGAAGGCCATGTACACCAAGGACTACAAGATGTTAGGCTTCACTAACCATGTAAACCCTGCCATGGACTTCACTCAGACTCCTCCAGGAATGCTGGCTCTAGATAACATGCTGTACCTCGCCAAGCTCCACCAGGACACCTACATCAGAattgTTCTGGAGAACAGCAGTCGGGAGGATAAGCATGAGTGTCCGTTTGGACGCTGTGCTATAGAGCTGACCCGGATGCTGTGTGAGATTCTGCAGGTTGGAGAACTGCCGAATGAGGGCTGTAACGACTACCACCCCATGTTCTTCACCCACGACCGAGCCTGGGAGGAgttcttctgtgtgtgtattcagcTCCTCAACAAGACCTGGAAGGAGATGAGAGCCACTGCAGAGGACTTCAACAAGgtgatgCAGGTGGTGCGGGAGCAGATCACCCGGGCGTTGGCGATGAAGCCGTCGTCTCTGGAGCAGCTGAAGGGTAAACTGCGCAGCCTGAGCTATGCTGAGATCCTGCGTCTGCGCCAGTCCGAGAGGATGAGCCAGGACGACTTCCAGTCAGCGCCAATCATTGAGCTCCGTGAGCGGATCCAGCCTGAGATTTTGGAGCTGATTAAACAGCAGAGACTGAACCGGCTGTGTGAGGGGAGCTGCTTTCGTAAGCTGGGGAACCGCCGGAGACAAGAGAAGTTCTGGTTCTGCCGTTTGTCTCTGAACCATAAAGTTCTGCACTACGGGGATCTGGACGAGTCTCCGCAGGGCGAGGTGCCTTTTGAACTGCTGACTGATAAAATTCCGGTGTCTGATATTAAGTCGGTGGTGACGGGGAAGGACTGTCCACATATGAAGGAGAAGAGTGCTCTGAAACAGAACAAGGAGGTTCTAGAGCTGGCGTTCTCTATCCTCTATGATCCTGACGAGGCTCTGAACTTCGTGGCACCGAGTAAATATGAGTACTGTATCTGGACGGACGGGCTGTGTGCGCTGCTGGGCAGAGAGATGGGGAGTGATCTCACACGTAGTGACCTCGACACGCTCATTAGCATGGAGATGAAGCTCCGCCTCCTCGACCTAGAGAACATCACCATCCCTGAAGCCCCGCCTCCTGTGCCCAAGGAGCCCAGCAGCTACAACTTCACTTACAACTACggatgagctgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtacgtttgtatgtgtgtgtgtgtgtgttcgtatGCGTGTGTGAGATGGGAgatttctgtgtatgaaatgGGAGAAACTTTTTAAATCCATAAAATCATGATATTAATCTGCCTTCCGTTTATCCATGGAAGTACAGGATTGTAAACTTTGCGTCTTTTATTACGAGCTGCTCTGTTTTCGTTTTGTTTTAACGTTAGCGTGTGAAAATGATGCTAATTAATATTTCTGTTGCTGTGTCAGCCAATAATGatcatatttttacttttattgcttttaatcatgaaaagacagattatattattattgaatttattaaaaaatgataaatagtaAGTAGAGACAAATCCTATATATGAAGACACTGAGCGTGTTTACATTCACTTATAAATCAgttcataatctgattactgcagttGTCTGAATATGCAAGTGGTCATGTGAACAGCATACCCCGACTTCTTGGAGCAGAATAAGGTGTAGAAATCTAATAAAGAGCTaaattttagctcagtaatcagatttctcagtGCATTTCTCTGTGCTTGTGTAAAAACAGACCTGAACAGATTACTGACAAACTCAAATGTTCTGCAGTAATCTGATTTATGAAGTCAGTTTAAACACACTCAATGTTTTTTACCAAAGTTTTGAGGAAATTTtagtcaaaaatgtatttttaaaatcatgtgGCATTAAAACGGTGGAGGGATACTAGAGGGCGTCATGCAACAAAAAATAGTCGCTAATGAAAATgtgtatttcttttctttttccgaTTTTCCACTATTTTAcccatttcttttcatttcttacCATCAGTATTAAATAGTGTTGAAAGCTCAGAAGGTTTACACACATAGGTTTACTGGTGGTTCTGgatagtataaaaataaaaatatttatattatattgttctatatattatatatgaccgTTAATACTGAAGCAGTTCCAGTCTGGTGATGTTTAAGCGCTTATCTGCTGATTATTATAGTGGCACCACTTTTACTGTGCATCTTGGTTTCGTTTAACATGATTCGTTAATTAAGGGGGTGATTATTTAATTAGGATTTTAACATTAATCTTCACTGAACTGCAGAGTTTTGTACTCCAGCTCGCTCTCACTACTAATCCATTGAAGTTTGTTACTGAGTACAGAttctatatttttgtaaatgctgTGATGTCACAGGTGTGCAGATATGAAGTGTAGGATATGTTTAGGTAGATATGTTTAGGGAGGAGCTTAAAATTATGGTACAGGCCGAGGTAAAATCCAAGGTTTTAGCTGAAGTGCATAAACAGGTACGAACCAAGGTTTGAGTGTCGTACAGGCTGAGGTTTGGGCCAAGTTTAAGCCGAGGTATGAACTGAGGTTTGGGCCAAGTTTAAGCCGAGGTTTGGACTGAGGTACAGCCAAGGTATAAGCTGAAGTTTGGGCCAGGTTTAAGCCGAGGTTTGGACTGAAGTACAGCTGAGGTATGAGCTGAGGTACGGGCCAAGTTTAAGCCGAGGTTTGGGCTGAGGTATGAGCTGAGGTTCGGGCGAAGTTTAAGCTGAGGTTTGAACTAAAGAACAGCCGAGGTATGAGCTGAGGTTTGAGCCAAGTTTAAGCCGAGGTTTGGGCTGAGGTACAGCAGAGGTATGAGCAAAATTTAAGCCGTGGTTTGAGCTGAGGTTTGAGCCAAGTTTAAGGCAAGGTTTGGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260257 lncRNA downstream 74471 21430020 ~ 21436453 (-) True npff
TU260224 lncRNA downstream 140145 21303518 ~ 21370779 (-) True G191791
TU260215 lncRNA downstream 231172 21279003 ~ 21279752 (-) True G191787
TU260104 lncRNA downstream 271402 21173472 ~ 21239522 (-) True G191691
TU260076 lncRNA downstream 404102 21105440 ~ 21106822 (-) True G191664
TU260302 lncRNA upstream 165085 21709916 ~ 21711285 (-) True G191827
TU260335 lncRNA upstream 288311 21833142 ~ 21833495 (-) True G191858
TU260349 lncRNA upstream 315295 21860126 ~ 21924848 (-) True G191870
TU260360 lncRNA upstream 413010 21957841 ~ 21958432 (-) True G191880
TU260364 lncRNA upstream 421678 21966509 ~ 21966712 (-) True G191884
XM_007248365.3 mRNA downstream 12861 21442288 ~ 21498063 (-) False itga7
XM_007248364.3 mRNA downstream 12861 21442288 ~ 21498063 (-) False itga7
XM_022682603.1 mRNA downstream 12861 21442288 ~ 21498063 (-) True itga7
XM_022682604.1 mRNA downstream 12861 21442705 ~ 21498063 (-) False itga7
XM_022682851.1 mRNA downstream 77090 21430016 ~ 21433834 (-) False npff
XM_007248379.3 mRNA upstream 5924 21550755 ~ 21570651 (-) False arfgap1
XM_015605612.2 mRNA upstream 5924 21550755 ~ 21570651 (-) False arfgap1
XM_015605611.2 mRNA upstream 5924 21550755 ~ 21570651 (-) False arfgap1
XM_015605610.2 mRNA upstream 5924 21550755 ~ 21570651 (-) True arfgap1
XM_007248378.3 mRNA upstream 5924 21550755 ~ 21570651 (-) False arfgap1
XR_002651627.1 other downstream 2663 21508052 ~ 21508261 (-) True LOC111195406
TU259248 other downstream 2608667 18897509 ~ 18902257 (-) True LOC103032794
TU259141 other downstream 2747496 18711234 ~ 18763428 (-) False LOC111195399
TU259137 other downstream 2782128 18709030 ~ 18728796 (-) False LOC111195399
TU258958 other downstream 3195815 18311506 ~ 18315109 (-) False LOC103041510
TU260340 other upstream 302138 21846969 ~ 21851642 (-) False G191862
TU260341 other upstream 302138 21846969 ~ 21851642 (-) True G191862
XR_002651628.1 other upstream 804516 22349347 ~ 22362457 (-) True alas1
XR_002651631.1 other upstream 1166191 22711022 ~ 22722905 (-) False amhr2
TU260753 other upstream 1241503 22786334 ~ 22788955 (-) False LOC103041653

Expression Profile