RNA id: XM_022682646.1


Basic Information

Item Value
RNA id XM_022682646.1
length 1268
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC103040317
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22693076 ~ 22705489 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctagctgcGAATCGAGCAGTAAGAAGTCAGATCTGGAGGAAACGTGAGGAGCAACTTCATCAACATGACTCAGAAAAAGATCGCCCCAGCCGTCAGCACTGTGTCTGGCAATCTGCCGCCCAGTTATGAAGAGGCGAACGCAGGATGCCCCAGCTACTGTTACGCAGACGGTTCATTTTCCTGGGAAGACAAACACATCCGGCGCATTTTTATCAGAAAGGTTTATTCCATCCTGATGCTGCAGCTGCTCGCCACACTCGCCATCGTCTGTGCTTTTACATTCTcGGCATCAGTAAAGTTCTATATCCAAACTCATCCTGGACTCTATTCACTATCCAATTTTCTGTTTCTTGGGACATTTCTGGCTCTGTCCTGCTGTGGAGATTTAAGAAGGCAGTTTCCCTGGAATCTGATTCTGCTGACAGTTTTTACGTTGAGTATGGCCTGCATGCTCGGCTTCATTTCCAGTTTCTATAACTCTCGCTCGGTGGTGCTGTGTTTGGGAATCACGGCTGTAGTTTGTTTTTCCGTTACGATCTTCAGCTTCCAGAGTCGGgtggaCGTGACGTCGTATCAGGGCGTTCTCTTCTCGCTCTGCGTTGTGATGCTGTGCTGCTCGCTGGTGATGGGATTTGTAGTCCCGTTCGGATACGTGCCCTGGATACATGCTATCTACGGGATTGGAGGAGCAATCCTCTTTACTATGTTCCTGGCCTTCGATACTCAGCTGCTGATGGGGAACAAGATGTACGCTATCAGCCCTGAGGAATATATCTTCGCTACTCTGAGTTTATACCTGGACGTCGTCAACCTCTTCACCTTCCTGCTGCAGCTGTTTGGGGGTGGAAGAGAATAAATAAGCCAATATTAACGTTCCTCCATCTGCATCCATAATGTAGGAAGATCTGCAGTCGGGATATTAGGATAGAAGCCTTTCAGTGATTCAGAAGACACAAAAAACCTCAGATCCACCATCGTTCCCCAGTGGACTGTTGCAGACGGTTCTTCCCCTCCTACTGGACTTTATCTGAATGTCTCAGTATTTTCATGTGAAACTGTGGGATCTGAACCTTCGGTAAAGATGATCCAATCCCTCACTTAATCCACAGAGGCGTTTGAGGACTGATTAGTGATGACGTGCTAGTTAGGATCTTTAGAAGCTCAGTTATATGTTGGACAGCAGTCTGAAGCTTCTGTTAGACCCAGTGATAAAAACTacatcggtaccactttaaaataagactacctttataaaggctttataaatg

Function

GO: NA

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260727 lncRNA downstream 4938 22684675 ~ 22688138 (-) True G192149
TU260733 lncRNA downstream 4938 22684675 ~ 22688138 (-) False G192149
TU260728 lncRNA downstream 5049 22684675 ~ 22688027 (-) False G192149
TU260730 lncRNA downstream 5049 22684675 ~ 22688027 (-) False G192149
TU260702 lncRNA downstream 39229 22609381 ~ 22653847 (-) True G192138
TU260722 lncRNA upstream 29602 22735091 ~ 22736242 (-) True G192145
TU260751 lncRNA upstream 80845 22786334 ~ 22788955 (-) False LOC103041653
TU260845 lncRNA upstream 233432 22938921 ~ 22939154 (-) True G192235
TU260847 lncRNA upstream 245518 22951007 ~ 22951326 (-) True G192237
TU260841 lncRNA upstream 255758 22961247 ~ 22962809 (-) True G192232
XM_022682636.1 mRNA downstream 53528 22460458 ~ 22639548 (-) False LOC103024753
XM_022682631.1 mRNA downstream 53528 22460458 ~ 22639548 (-) False LOC103024753
XM_022682638.1 mRNA downstream 53529 22460458 ~ 22639547 (-) False LOC103024753
XM_022682634.1 mRNA downstream 53529 22460458 ~ 22639547 (-) False LOC103024753
XM_022682632.1 mRNA downstream 53529 22460458 ~ 22639547 (-) False LOC103024753
XM_022682648.1 mRNA upstream 4060 22709549 ~ 22722902 (-) False amhr2
XM_022682647.1 mRNA upstream 4060 22709549 ~ 22722901 (-) True amhr2
XM_007248404.3 mRNA upstream 34244 22739733 ~ 22782472 (-) True LOC103040941
XM_007248406.3 mRNA upstream 34244 22739733 ~ 22782470 (-) False LOC103040941
XM_007248405.3 mRNA upstream 34244 22739733 ~ 22759556 (-) False LOC103040941
XR_002651628.1 other downstream 330619 22349347 ~ 22362457 (-) True alas1
TU260340 other downstream 841434 21846969 ~ 21851642 (-) False G191862
TU260341 other downstream 841434 21846969 ~ 21851642 (-) True G191862
XR_002651626.1 other downstream 1148245 21510924 ~ 21544831 (-) False elmo2
XR_002651627.1 other downstream 1184815 21508052 ~ 21508261 (-) True LOC111195406
XR_002651631.1 other upstream 5533 22711022 ~ 22722905 (-) False amhr2
TU260753 other upstream 80845 22786334 ~ 22788955 (-) False LOC103041653
TU260862 other upstream 349144 23054633 ~ 23058805 (-) True G192251
TU261664 other upstream 2506186 25211675 ~ 25217550 (-) True G192815
TU261852 other upstream 3169421 25874910 ~ 25878653 (-) False LOC111195415

Expression Profile